Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10c14
(542 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49840.1 68416.m05449 proline-rich family protein contains pr... 33 0.16
At3g11920.1 68416.m01461 glutaredoxin-related contains INTERPRO ... 31 0.66
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 29 1.5
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 29 1.5
At3g44880.1 68416.m04835 Rieske [2Fe-2S] domain-containing prote... 29 2.0
At1g09770.1 68414.m01096 myb family transcription factor contain... 29 2.0
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 29 2.7
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 29 2.7
At1g70985.1 68414.m08189 hydroxyproline-rich glycoprotein family... 29 2.7
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 28 3.5
At3g46800.1 68416.m05080 DC1 domain-containing protein contains ... 27 8.1
At1g17600.1 68414.m02173 disease resistance protein (TIR-NBS-LRR... 27 8.1
>At3g49840.1 68416.m05449 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 606
Score = 32.7 bits (71), Expect = 0.16
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Frame = +1
Query: 220 PIPTYPSAGY--HGQAPAQAGYGTNYV---YGGPHYRLADPAEF 336
P P YP AGY G P Q GYG Y Y P Y P ++
Sbjct: 518 PPPQYPQAGYPPAGYPPPQQGYGQGYPAQGYPPPQYPQGHPPQY 561
>At3g11920.1 68416.m01461 glutaredoxin-related contains INTERPRO
Domain IPR002109, Glutaredoxin (thioltransferase)
Length = 630
Score = 30.7 bits (66), Expect = 0.66
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 63 LFFNYHYHYGGRCSLGSSRHKGEFEERAR 149
+FFN H+GG +L S R+ GEF+ R +
Sbjct: 211 IFFN-EKHFGGLMALNSLRNSGEFDRRVK 238
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Frame = +1
Query: 205 GASSAPIPTYPSAGY---HGQAPAQAGYGTNYVYGGPHY 312
G APIP+Y GY G AGYG GG Y
Sbjct: 9 GGGGAPIPSYGGDGYGGGGGYGGGDAGYGGRGASGGGSY 47
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Frame = +1
Query: 205 GASSAPIPTYPSAGY---HGQAPAQAGYGTNYVYGGPHY 312
G APIP+Y GY G AGYG GG Y
Sbjct: 9 GGGGAPIPSYGGDGYGGGGGYGGGDAGYGGRGASGGGSY 47
>At3g44880.1 68416.m04835 Rieske [2Fe-2S] domain-containing protein
similar to lethal leaf-spot 1 from Zea mays
[gi:1935909]; contains Pfam PF00355 Rieske [2Fe-2S]
domain
Length = 537
Score = 29.1 bits (62), Expect = 2.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 62 FIFQLPLPLWWSVLPRFF 115
F F +P P WW V+PR++
Sbjct: 347 FQFSVPGPAWWQVVPRWY 364
>At1g09770.1 68414.m01096 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 844
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 331 QPGLLVDSEVLRRRSLFHIPPGQVPGHGIQPMGR 230
Q L D EV+R+RS +PP Q+ H ++ + +
Sbjct: 279 QANKLNDPEVVRKRSKLMLPPPQISDHELEEIAK 312
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 28.7 bits (61), Expect = 2.7
Identities = 29/90 (32%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Frame = +1
Query: 115 PDTKGSLRNGQDYFRDKRSQ----YGTYYTSPCGGASSAPIPTYPSAGYH--GQAPAQAG 276
P S+ F D RS YG Y GG P Y S G + G++ G
Sbjct: 208 PKKPNSVTTPSKRFGDSRSNFGGGYGDGYGGGHGGGYGGPGGPYKSGGGYGGGRSGGYGG 267
Query: 277 YGTNY-VYGGPHY-RLADPAEFDPEMLGYS 360
YG + YGG Y P +P LGYS
Sbjct: 268 YGGEFGGYGGGGYGGGVGPYRGEP-ALGYS 296
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +1
Query: 187 YTSPCGGASSAPIPTYPSAGYHGQAPAQAGYGTNYVYGG 303
Y +P GG ++ Y G A GYG N YGG
Sbjct: 135 YGAPAGGYGGGAGGYGGNSSYSGNAGGGGGYGGNSSYGG 173
>At1g70985.1 68414.m08189 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 135
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +1
Query: 169 SQYGTYYTSPCG---GASSAPIPTYPSAGYHGQAPAQAGY 279
+Q YY P G SS+ +P YPS Y+G P+ GY
Sbjct: 45 TQPAGYYPQPTGYYPPPSSSNVPNYPSPPYYGGNPS-GGY 83
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 235 PSAGYHGQAPAQAGYGT-NYVYGGPHYRLADPAEF 336
P + GQA A AGYG+ Y YGG P+ +
Sbjct: 316 PGSAVMGQAGASAGYGSQGYGYGGNDSSYGTPSAY 350
>At3g46800.1 68416.m05080 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 682
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Frame = +2
Query: 239 RLDTMARHLPRRDMEQTTSTEDLTI-------D*QTRLSLIQKCLDIRIWTNTCNICSIC 397
RLD LPR+ M Q L + D Q + + +D + W TCN+C I
Sbjct: 546 RLDFRCATLPRKVMNQRYDDHPLYLSYGENKEDGQLWCEVCETKVDPKEWLYTCNLCGII 605
Query: 398 I 400
+
Sbjct: 606 L 606
>At1g17600.1 68414.m02173 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1025
Score = 27.1 bits (57), Expect = 8.1
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 197 HAAERLLRQFLPTHRLD-TMARHLPRR-DMEQTTSTEDLTID*QTRLSLIQKCLDIR 361
H L + RLD T ++HL + D+ TS E+L ++ TRL I +C+ R
Sbjct: 642 HVLLYLAQMLKSLKRLDVTGSKHLKQLPDLSSITSLEELLLEQCTRLEGIPECIGKR 698
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,883,165
Number of Sequences: 28952
Number of extensions: 248858
Number of successful extensions: 791
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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