Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c13
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0156 - 11963580-11963914,11964422-11964517,11964618-119646...    31   0.65 
08_02_1358 - 26372559-26372887,26373183-26373262,26373287-263734...    30   1.5  
06_03_0852 - 25371461-25371783,25372080-25372159,25372472-253725...    30   2.0  
06_03_0391 - 20287755-20288084,20288174-20288414,20288519-202888...    29   4.6  
02_05_1332 + 35758657-35758728,35758959-35760689                       28   8.0  

>04_03_0156 -
           11963580-11963914,11964422-11964517,11964618-11964697,
           11965250-11965290,11965402-11965548,11965922-11966035,
           11968842-11968961,11969491-11969631,11969892-11970014,
           11970357-11970566
          Length = 468

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +2

Query: 623 YPVEEHTVATDDGYHLTVLRI 685
           Y  EEHTV T+DGY L++ RI
Sbjct: 64  YACEEHTVTTEDGYILSLQRI 84


>08_02_1358 -
           26372559-26372887,26373183-26373262,26373287-26373420,
           26373546-26373689,26373809-26373919,26374165-26374305,
           26376839-26376964,26377072-26377263
          Length = 418

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +2

Query: 623 YPVEEHTVATDDGYHLTVLRI 685
           YP EEH V T DGY L + RI
Sbjct: 58  YPCEEHEVTTQDGYILGLQRI 78


>06_03_0852 -
           25371461-25371783,25372080-25372159,25372472-25372554,
           25372597-25372740,25372836-25372946,25373238-25373354,
           25373436-25373562,25374160-25374296
          Length = 373

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +2

Query: 623 YPVEEHTVATDDGYHLTVLRI 685
           YP EE+ V T+DGY L++ RI
Sbjct: 82  YPCEEYKVTTEDGYILSLKRI 102


>06_03_0391 -
           20287755-20288084,20288174-20288414,20288519-20288844,
           20288954-20289097,20289260-20289380,20289645-20289733,
           20289821-20289891,20290165-20290309,20290390-20290479,
           20290991-20291239
          Length = 601

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
 Frame = +2

Query: 404 SVVWKNIEMASGPNSPVQTEQDIEDIFGDSLKTWDHFTDDAKK----NTFHDAISETQRE 571
           SVV K + M++ P+ PVQ E D + +       W+     A+K       H    E   E
Sbjct: 109 SVVTKLLLMSNFPSLPVQNESDSDSV---KFSLWEEPYKQARKWKPCAAKHSLPDEVPEE 165

Query: 572 NNEDFHL 592
           NN  F L
Sbjct: 166 NNNGFIL 172


>02_05_1332 + 35758657-35758728,35758959-35760689
          Length = 600

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
 Frame = +2

Query: 392 NHGDSVVWKNIEMASGPNSPVQTEQDIEDIFGDSLKTWDHF----TDDAKKNTFHDAISE 559
           N  D +V  N E  +G  +  Q E D+  ++GDSL   D       DDA +        E
Sbjct: 500 NIEDDIVGMNTE-GNGEEA-FQPEDDV--VYGDSLSPADDIAAEAADDASRELEEQQDVE 555

Query: 560 TQRENNEDF-HLNATELLKKHQYPVEEHTVATDDGY 664
           T  E + +   +NA E     +Y  E+  +  DD +
Sbjct: 556 TAEEYDYEMDDVNAAEENDYQEYEDEDDDLEDDDDF 591


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,016,979
Number of Sequences: 37544
Number of extensions: 288418
Number of successful extensions: 697
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)