Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c12
         (600 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    26   0.28 
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   2.6  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    22   3.4  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   6.0  
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    21   7.9  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           21   7.9  

>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 587 FCWDPPPMRSSIELVLLSWL*TPLGKP 507
           F W   P  + +E+V+L WL   +G P
Sbjct: 103 FSWIASPACTELEVVMLDWLGKMIGLP 129


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +1

Query: 418 GTGPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPS 519
           G GP    Y   FN P       P     AGFPS
Sbjct: 33  GYGPLRTSYQHHFNSPAGNAHTGPTGTHDAGFPS 66


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 451 APHTAQELVQYPELGVQTSA 392
           AP+ + +   YP +GV++SA
Sbjct: 12  APYPSTDQNPYPSIGVESSA 31


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +1

Query: 478 TPYPQYHPMAG 510
           +PYP  HP++G
Sbjct: 71  SPYPPNHPLSG 81


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
          protein 5 protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 85 IFDDFKD*KTIHR 47
          IF DF + KT+HR
Sbjct: 15 IFSDFVNGKTLHR 27


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 12/55 (21%), Positives = 25/55 (45%)
 Frame = +1

Query: 211 PQECTIALASVRSFGTEDRETQYPVAPQSQVYDYILFRGSDIKDIRVLNNVPSMP 375
           PQ+  I   S+        +++ P+AP  +    ++   SD++  R +  +P  P
Sbjct: 26  PQQSIIVSGSITQPTKTVIQSKRPLAPAPERTSVLVTNNSDLRCKRKIQFMPYGP 80


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,702
Number of Sequences: 336
Number of extensions: 3645
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)