Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c12
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    85   6e-18
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    30   0.22 
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    29   0.39 
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    27   2.1  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   3.7  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    26   3.7  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   6.4  

>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 85.4 bits (202), Expect = 6e-18
 Identities = 48/118 (40%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
 Frame = +1

Query: 142 LGSKISLISKADIRYEGRLFTVDPQECTIALASVRSFGTEDR--ETQYPVAPQSQVYDYI 315
           +GS+ISLISK+DIRY G L  ++ Q+ T+AL  VR  GTE R  +    + P   V+DYI
Sbjct: 5   IGSRISLISKSDIRYVGILQDINSQDSTLALKHVRWCGTEGRKQDPSQEIPPSDNVFDYI 64

Query: 316 LFRGSDIKDIRVLNNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYP 489
           +FRGSD+KD+R+     + P+ P +   + P  +G+    GQY   +N     Q P P
Sbjct: 65  VFRGSDVKDLRI-EEPATTPSAPPVQPPNDPAIIGSN--SGQY--NWNQAQTAQPPQP 117


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +2

Query: 380 ILPLC--RCLYPQLWVLDQLLGSMWGSLTIQLLDKLHILSIIQWLAFQVEFTTSSTRRA 550
           ILPL     + P+  VL+ +LGS  G + + L +KL ++ I+Q +   V    +  RRA
Sbjct: 671 ILPLMLQALVDPEPAVLESVLGSFSGLIELHLFEKLVVVDILQLVLPLVAVPNAYIRRA 729


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 19/48 (39%), Positives = 21/48 (43%)
 Frame = +1

Query: 394 QMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPSGVHNQL 537
           QM     L +   P   +G   HP V QTP P   P    PSG  NQL
Sbjct: 138 QMQSREALLSQQIPPNQIGINAHPAVRQTPQPA--PSPNTPSGNANQL 183


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
 Frame = +1

Query: 442 YVGQFNHPVVGQTPYPQYH----PMAGFPSGV 525
           YVGQ + PV    P P Y+    P AG P+ +
Sbjct: 111 YVGQSSQPVPSYNPLPSYNTASLPNAGIPAAM 142


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 459 PSSCWTNSISSVSSNGWLSKWS 524
           P+S   N    V+ NGWL++WS
Sbjct: 349 PNSTVLNEHGYVTYNGWLAQWS 370


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
 Frame = +1

Query: 205 VDPQECTIALASVRSFGTEDRETQYP-VAPQSQVYDYILFRGSDIKDIRVLNNVPSMPND 381
           + P+    +  SV       RE QY     + Q  +  L    ++   ++ N+    P +
Sbjct: 55  IKPRPGPTSALSVEEAKFRVREKQYQDTIGKLQKENNELLEQLEMLQAQLKNSTLDSPKE 114

Query: 382 PAIMQMSVPPTLGTGPAPGQYVGQFNHPV 468
             +    V P   T     +YV Q+N+PV
Sbjct: 115 VEVNSEVVKPDSATTENENRYVNQYNYPV 143


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +1

Query: 430 APGQY---VGQFNHPVVGQTPYPQYHPMAGFPSGVHNQLNK 543
           AP Q+   +G+FNH  +G         +A    G+H  LN+
Sbjct: 380 APRQFKATIGKFNHSFLGYGQQDSQEFLAFLLDGLHEDLNR 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,743,864
Number of Sequences: 5004
Number of extensions: 59565
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)