Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10c12
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0138 + 17093196-17093325,17095704-17095804,17096224-170962... 106 1e-23
01_01_0078 + 587975-588179,588506-588606,589087-589167,589240-59... 87 8e-18
05_01_0142 - 940421-940701,941262-941574 30 1.2
07_01_0853 + 6982185-6983593,6985926-6986497,6987139-6988439 30 1.6
11_06_0418 - 23317077-23317343,23317614-23317787,23317886-233179... 29 2.2
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 29 3.8
10_01_0351 + 3857296-3857324,3857888-3858116,3858207-3858368 28 5.0
06_03_0794 - 24671955-24672362,24672469-24672505,24672804-246728... 28 5.0
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157... 28 6.6
11_06_0497 + 24337772-24337993,24338042-24338083,24338176-24339357 27 8.7
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072... 27 8.7
08_01_0277 - 2262557-2264128 27 8.7
06_03_0854 + 25400855-25403741,25406174-25407708 27 8.7
02_05_0324 + 27941007-27941322,27941818-27942164 27 8.7
02_03_0406 + 18663986-18664059,18665082-18665405,18665499-186655... 27 8.7
01_05_0534 + 22999876-23000333,23000835-23000949 27 8.7
>06_03_0138 +
17093196-17093325,17095704-17095804,17096224-17096292,
17096403-17097650,17097763-17097871,17099459-17099655,
17099732-17099842,17099927-17100079
Length = 705
Score = 106 bits (255), Expect = 1e-23
Identities = 62/139 (44%), Positives = 85/139 (61%), Gaps = 13/139 (9%)
Frame = +1
Query: 142 LGSKISLISKADIRYEGRLFTVDPQECTIALASVRSFGTEDRETQYPVAPQS-QVYDYIL 318
+GS ISL SK++IRYEG L+T++ +E +I L +VRSFGTE R+ P S ++Y+YIL
Sbjct: 11 IGSVISLTSKSEIRYEGVLYTINTEESSIGLRNVRSFGTEGRKKDGQQIPASDKIYEYIL 70
Query: 319 FRGSDIKDIRVLNNVPSMP----NDPAIMQ--------MSVPPTLGTGPAPGQYVGQFNH 462
FRGSDIKD++V ++ P+ P NDPAI+Q S+PP T P + GQ
Sbjct: 71 FRGSDIKDLQVKSSPPAQPTTLHNDPAIIQSHYPCPASTSLPPPASTAADPASHNGQSG- 129
Query: 463 PVVGQTPYPQYHPMAGFPS 519
+ P PQ+ P A PS
Sbjct: 130 -IQMPPPLPQFQPGASLPS 147
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +1
Query: 358 NVPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPS 519
++PS + P + P T PG + GQ + P PQY P A PS
Sbjct: 144 SLPSWNSSPMPSSANGAPASTTTADPGSHNGQSG--IQMPPPLPQYQPGASLPS 195
>01_01_0078 +
587975-588179,588506-588606,589087-589167,589240-590178,
590388-590542,590837-590902,590963-591023,591659-591853,
591939-592049,592116-592280
Length = 692
Score = 87.4 bits (207), Expect = 8e-18
Identities = 48/94 (51%), Positives = 65/94 (69%), Gaps = 9/94 (9%)
Frame = +1
Query: 142 LGSKISLISKADIRYEGRLFTVDPQECTIALASVRSFGTEDRETQYPVAPQS-QVYDYIL 318
+GS ISL SK++IRYEG L+ ++ +E +I L +VRSFGTE R+ P S +VY+YIL
Sbjct: 36 IGSLISLTSKSEIRYEGILYNINTEESSIGLRNVRSFGTEGRKKDGVQIPASTKVYEYIL 95
Query: 319 FRGSDIKDIRVLNNVPSMP--------NDPAIMQ 396
FRGSDIKD++V ++ P P NDPAI+Q
Sbjct: 96 FRGSDIKDLQVKSSPPPPPPPQPAAPHNDPAIIQ 129
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Frame = +1
Query: 406 PPTLGTGPAPGQYVGQFNHPVVGQTP----YPQY--HPMAGFPSGVHNQLNKTSS 552
PP P PG Y Q +P G P YPQ+ +P AG+P +Q SS
Sbjct: 56 PPPGAYPPPPGAYPPQHGYPQPGGYPPPGGYPQHGGYPPAGYPGSSGHQGGHGSS 110
>07_01_0853 + 6982185-6983593,6985926-6986497,6987139-6988439
Length = 1093
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +1
Query: 136 PELGSKISLISKADIRYEGRLFTVDPQECTIALASVRSFGTEDRETQYPVAPQSQVY 306
P S SL++ D + R+F D ++ + AL ++ + E R +YPVA +V+
Sbjct: 96 PSFRSDGSLLAVGDKKGVVRVFRADKKQSSGALRTLTAHTAETRVVRYPVAGGDKVH 152
>11_06_0418 -
23317077-23317343,23317614-23317787,23317886-23317971,
23318125-23318244,23318338-23318368,23318457-23318532,
23318672-23318759,23318877-23318938,23319041-23319117,
23319890-23319992,23320237-23320298,23321116-23321289,
23322160-23322405
Length = 521
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 409 PTLGTGPAPGQYVGQFNHPVVGQTPYP 489
PTL T APG Y N + PYP
Sbjct: 32 PTLSTPHAPGPYTSSTNAEAIATQPYP 58
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +3
Query: 471 WTNSISSVSS--NGWLSKWSSQPAQQDE 548
W +S S + NGWL KW ++P Q+E
Sbjct: 635 WISSQRSYAEALNGWLRKWLTEPEVQEE 662
>10_01_0351 + 3857296-3857324,3857888-3858116,3858207-3858368
Length = 139
Score = 28.3 bits (60), Expect = 5.0
Identities = 23/62 (37%), Positives = 29/62 (46%)
Frame = +1
Query: 121 MSSGMPELGSKISLISKADIRYEGRLFTVDPQECTIALASVRSFGTEDRETQYPVAPQSQ 300
M +GMP L I + S I + G T D + CTI L + S D +PVA Q
Sbjct: 1 MPTGMPSLLRNI-MQSLVSIDFHGS-HTRD-RFCTICLRAFSSERCLDHSMHHPVAEQPN 57
Query: 301 VY 306
VY
Sbjct: 58 VY 59
>06_03_0794 -
24671955-24672362,24672469-24672505,24672804-24672858,
24674044-24674167,24674670-24674903
Length = 285
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/40 (45%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +1
Query: 424 GPAPGQYVGQFNHPVVGQTPY-PQYHPMAGFPSGVHNQLN 540
GPA Y GQF PV G PY P Y P P N N
Sbjct: 172 GPAVYPY-GQFGQPVPGDQPYSPGYVPGHILPLSNQNAAN 210
>04_03_0867 -
20414999-20415160,20415255-20415384,20415515-20415702,
20415967-20416001,20416363-20416579,20416737-20416820,
20417609-20417875,20417954-20418061,20418163-20418249,
20418629-20419399
Length = 682
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 200 LLSILRNVLSP--WLACVHLARRIERLNIR*HLKAKYMTTFCSVVLTSRIS 346
LLS++ + P WL L RR+ +++ H+ +T + + VL S ++
Sbjct: 279 LLSVVAATVIPCMWLVIASLGRRLRQISKEAHISLAMLTVYLNDVLPSMLT 329
>11_06_0497 + 24337772-24337993,24338042-24338083,24338176-24339357
Length = 481
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/91 (20%), Positives = 34/91 (37%)
Frame = +1
Query: 304 YDYILFRGSDIKDIRVLNNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTP 483
+ +I + D D + + ++ +VP L GP+ VG FN+ V
Sbjct: 163 FGFITYDSEDAVDKALFKTFHELNGKMVEVKRAVPKELSPGPSMRSPVGGFNYAVNRANN 222
Query: 484 YPQYHPMAGFPSGVHNQLNKTSSMLDLIGGG 576
+ + PS V + + L+ GG
Sbjct: 223 FLNGYTQGYNPSPVGGYGMRMDARFGLLSGG 253
>10_08_0425 -
17806117-17806401,17806862-17806984,17807076-17807222,
17807307-17807450,17808557-17808668,17808762-17808898,
17809016-17809156,17810921-17811004,17811275-17811742,
17811858-17811936,17812494-17812506,17813884-17814460,
17814502-17814774,17814899-17815045,17815354-17815413,
17816124-17816510
Length = 1058
Score = 27.5 bits (58), Expect = 8.7
Identities = 21/62 (33%), Positives = 26/62 (41%)
Frame = +1
Query: 355 NNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPSGVHNQ 534
+N+ P A+M SV P PGQY G N P H AG P+G Q
Sbjct: 140 HNLVLPPFHNAMMAPSVAAAALQPPVPGQYFG--NRPSFSYNVVS--HANAGLPTGQQFQ 195
Query: 535 LN 540
L+
Sbjct: 196 LD 197
>08_01_0277 - 2262557-2264128
Length = 523
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 587 FCWDPPPMRSSIELVLLSWL*TPLGKPA 504
F W P + +E++ L WL LG PA
Sbjct: 127 FTWQAAPAATELEVLALDWLAQLLGLPA 154
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 382 PAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAGFP 516
P I+Q+ VPP+ P P + + PV Q P P +A P
Sbjct: 272 PVIVQVPVPPSSDAAPVPAPTLSDAS-PVPVQVPAPPSSDVALVP 315
>02_05_0324 + 27941007-27941322,27941818-27942164
Length = 220
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 418 GTGPAPGQYVGQFNHPVV-GQTPYPQYHPMAGFPSGVHNQLNKTSSMLDLIGGGSQ 582
G G G Y +F+ P + G +PQYH + G HN + + DL G +
Sbjct: 25 GDGDRIGTYA-KFSGPKLRGLRIWPQYHLIYRTKRGCHNHIASVARSPDLTSGNGK 79
>02_03_0406 +
18663986-18664059,18665082-18665405,18665499-18665559,
18666136-18666282,18666368-18666492,18666619-18666648,
18666689-18666893,18667532-18667741,18667886-18667888,
18670034-18670942,18671239-18672069
Length = 972
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = -2
Query: 461 WLNCPTYCPGAGPVPRVGGTDICIMAGSLGIEGTLFSTLISLMSEPRNRM*SYTWL*G 288
W N C G + V G I+ S G+EG + S+L L S R + SY L G
Sbjct: 417 WRNRTDCCTWEGIICDVDGAVTKILLASRGLEGRISSSLSELTSLSRLNL-SYNSLSG 473
>01_05_0534 + 22999876-23000333,23000835-23000949
Length = 190
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = +1
Query: 364 PSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQ 492
P + P +S PPTL P P + + P Q P P+
Sbjct: 52 PPLSPPPKTPTLSTPPTLSQPPTPVKPAAPSSSPPPSQDPEPK 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,163,231
Number of Sequences: 37544
Number of extensions: 411415
Number of successful extensions: 1054
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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