Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10c12
(600 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g26110.1 68414.m03186 expressed protein 95 4e-20
At5g45330.1 68418.m05564 expressed protein ; expression supporte... 82 2e-16
At4g19360.1 68417.m02851 expressed protein 60 1e-09
At4g19340.1 68417.m02849 hypothetical protein 41 7e-04
At4g19260.1 68417.m02840 kelch repeat-containing protein contain... 40 0.001
At4g34150.1 68417.m04846 C2 domain-containing protein similar to... 36 0.015
At4g19330.1 68417.m02848 kelch repeat-containing F-box family pr... 32 0.33
At5g26910.1 68418.m03209 expressed protein 31 0.77
At4g05150.1 68417.m00773 octicosapeptide/Phox/Bem1p (PB1) domain... 30 1.0
At3g25950.1 68416.m03234 hypothetical protein 30 1.0
At2g25930.1 68415.m03112 hydroxyproline-rich glycoprotein family... 30 1.3
At1g25510.1 68414.m03168 aspartyl protease family protein contai... 29 1.8
At4g19200.1 68417.m02833 proline-rich family protein contains pr... 29 2.4
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai... 29 2.4
At1g70620.2 68414.m08137 cyclin-related contains weak similarity... 29 2.4
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 29 2.4
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 29 3.1
At2g21960.1 68415.m02609 expressed protein 29 3.1
At5g12210.2 68418.m01433 geranylgeranyl transferase type II beta... 28 4.1
At5g12210.1 68418.m01432 geranylgeranyl transferase type II beta... 28 4.1
At5g45350.1 68418.m05567 proline-rich family protein contains pr... 28 5.4
At5g24355.1 68418.m02871 expressed protein ; expression supporte... 28 5.4
At5g54440.1 68418.m06780 expressed protein 27 9.5
At5g43770.1 68418.m05353 proline-rich family protein contains pr... 27 9.5
>At1g26110.1 68414.m03186 expressed protein
Length = 611
Score = 94.7 bits (225), Expect = 4e-20
Identities = 53/107 (49%), Positives = 71/107 (66%), Gaps = 10/107 (9%)
Frame = +1
Query: 142 LGSKISLISKADIRYEGRLFTVDPQECTIALASVRSFGTEDRETQYP-VAPQSQVYDYIL 318
+GS ISL SK++IRYEG L+ ++ E +I L +VRSFGTE R+ P V P +VY+YIL
Sbjct: 18 VGSLISLTSKSEIRYEGILYNINTDESSIGLQNVRSFGTEGRKKDGPQVPPSDKVYEYIL 77
Query: 319 FRGSDIKDIRVLNNVPSMP------NDPAIMQMSVP---PTLGTGPA 432
FRG+DIKD++V + P P NDPAI+Q P PT G+ P+
Sbjct: 78 FRGTDIKDLQVKASPPVQPPASTINNDPAIIQSHYPSPMPTSGSLPS 124
>At5g45330.1 68418.m05564 expressed protein ; expression supported
by MPSS
Length = 571
Score = 82.2 bits (194), Expect = 2e-16
Identities = 44/77 (57%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Frame = +1
Query: 142 LGSKISLISKADIRYEGRLFTVDPQECTIALASVRSFGTEDRETQYP-VAPQSQVYDYIL 318
+GS ISLISK +IRYEG L+ ++ Q+ T+ L +VRS GTE R+ P + P +VYDYIL
Sbjct: 34 IGSFISLISKYEIRYEGILYHLNVQDSTLGLKNVRSCGTEGRKKDGPQIPPCDKVYDYIL 93
Query: 319 FRGSDIKDIRVLNNVPS 369
FRGSDIKD++V N PS
Sbjct: 94 FRGSDIKDLQV-NPSPS 109
>At4g19360.1 68417.m02851 expressed protein
Length = 268
Score = 59.7 bits (138), Expect = 1e-09
Identities = 30/71 (42%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Frame = +1
Query: 142 LGSKISLISKADIRYEGRLFTVDPQECTIALASVRSFGTEDR-ETQYPVAPQSQVYDYIL 318
+GS ++LI+ DIRYEG L ++ QE T+ L +V +GTE R + + P +++ +YIL
Sbjct: 28 IGSFVTLIANFDIRYEGILCFLNLQESTLGLQNVVCYGTEGRNQNGVQIPPDTKIQNYIL 87
Query: 319 FRGSDIKDIRV 351
F G++IK+I V
Sbjct: 88 FNGNNIKEIIV 98
>At4g19340.1 68417.m02849 hypothetical protein
Length = 232
Score = 40.7 bits (91), Expect = 7e-04
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Frame = +1
Query: 142 LGSKISLISKADIRYEGRLFTVDPQECTIALAS-VRSFG--TEDRETQYPVAPQSQVYDY 312
+G ++++S DIRYEG + ++ Q+ + L + VR +G E+ Q +V+ +
Sbjct: 20 IGKFVAVLSNNDIRYEGVISLLNLQDSKLGLQNVVRVYGREVENDNEQRVFQVLKEVHSH 79
Query: 313 ILFRGSDIK 339
++FRGSDIK
Sbjct: 80 MVFRGSDIK 88
Score = 31.1 bits (67), Expect = 0.58
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +1
Query: 142 LGSKISLISKADIRYEGRLFTVDPQECTIALASVRSFGTEDR-ETQYPVAPQSQVYDYIL 318
+G SLI+ D+R EG + V + I + + +GTE R + + + +Q+ I
Sbjct: 129 IGHVGSLITTEDVRIEGVISHVKFHDSMIFMKNCMCYGTEGRTKRRRSIVACNQLAGSIH 188
Query: 319 FRGSDIKDIRVL 354
F+ DIK + ++
Sbjct: 189 FKFRDIKALEII 200
>At4g19260.1 68417.m02840 kelch repeat-containing protein contains
Pfam profile PF01344: Kelch motif
Length = 288
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Frame = +1
Query: 142 LGSKISLISKADIRYEGRLFTVDPQECTIALAS-VRSFG--TEDRETQYPVAPQSQVYDY 312
+G ++++S DIRYEG + ++ Q+ + L + VR +G E+ Q +V+ +
Sbjct: 20 IGKFVAVMSNNDIRYEGVISLLNLQDSKLGLQNVVRVYGREVENDNEQRVFQVLKEVHSH 79
Query: 313 ILFRGSDIK 339
++FRGSDIK
Sbjct: 80 MVFRGSDIK 88
Score = 31.1 bits (67), Expect = 0.58
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +1
Query: 142 LGSKISLISKADIRYEGRLFTVDPQECTIALASVRSFGTEDR-ETQYPVAPQSQVYDYIL 318
+G SLI+ D+R EG + V + I + + +GTE R + + + +Q+ I
Sbjct: 129 IGHVGSLITTEDVRIEGVISHVKFHDSMIFMKNCMCYGTEGRTKRRRSIVACNQLAGSIH 188
Query: 319 FRGSDIKDIRVL 354
F+ DIK + ++
Sbjct: 189 FKFRDIKALEII 200
>At4g34150.1 68417.m04846 C2 domain-containing protein similar to
calcium-dependent protein kinase [Dunaliella
tertiolecta] GI:6644464; contains Pfam profile PF00168:
C2 domain
Length = 247
Score = 36.3 bits (80), Expect = 0.015
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 358 NVPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQ-YHPMAGFP 516
+ PS P P + Q S PP+ Y G +P V Q P P Y P +G+P
Sbjct: 138 SAPSAPYAPHVPQYSAPPSASPYSTAPPYSGPSLYPQVQQYPQPSGYPPASGYP 191
>At4g19330.1 68417.m02848 kelch repeat-containing F-box family
protein very low similarity to SKP1 interacting partner
6 [Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 537
Score = 31.9 bits (69), Expect = 0.33
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 23/106 (21%)
Frame = +1
Query: 142 LGSKISLISKADIRYEGRLFTVDPQECTIALAS---------------------VRSFG- 255
+G ++++S DIRYEG + ++ Q+ + L + VR +G
Sbjct: 20 IGKFVAVMSNNDIRYEGVISLLNLQDSKLGLQNGNNSIPNPLQDLLFMIFFFSIVRVYGR 79
Query: 256 -TEDRETQYPVAPQSQVYDYILFRGSDIKDIRVLNNVPSMPNDPAI 390
E+ Q +V+ +++FRGSDIK + VL+ P ++ AI
Sbjct: 80 EVENDNEQRVFQVLKEVHSHMVFRGSDIKSVEVLSLPPPARHNSAI 125
>At5g26910.1 68418.m03209 expressed protein
Length = 900
Score = 30.7 bits (66), Expect = 0.77
Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +3
Query: 246 FIWHGGSRDSI-SGSTSKPSI*LHSVP 323
F WHG SR + SGSTS+ S+ ++SVP
Sbjct: 17 FDWHGKSRKKLFSGSTSELSVLVNSVP 43
>At4g05150.1 68417.m00773 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein various predicted proteins
contains Pfam profile PF00564: PB1 domain
Length = 477
Score = 30.3 bits (65), Expect = 1.0
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = +1
Query: 274 QYPVAPQSQVYDYILFRGSDIKDIRVLNNVPSMPNDPAIMQ---MSVPPTLGTGPA--PG 438
QY P QV+ ++G I V S+P + + Q M P P PG
Sbjct: 334 QYAPGPGQQVH----YQGHTIHQSPVYYVPGSVPGNHMVQQGNHMVQPGNHMVQPVQMPG 389
Query: 439 QYVGQFNHPVVGQTPYPQYHPMAG 510
QY+ Q++H +G PQ H MAG
Sbjct: 390 QYLQQYHHVPMGY-HQPQTHQMAG 412
>At3g25950.1 68416.m03234 hypothetical protein
Length = 251
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 2 VANFPSVILLFVLIYSVDSFSVFEIVENLCHRNRS 106
+A FPS +LLF+ +Y++ F VF + H S
Sbjct: 12 LATFPSFLLLFLAVYTIGYFLVFRTWKQSSHLGAS 46
>At2g25930.1 68415.m03112 hydroxyproline-rich glycoprotein family
protein identical to cDNA nematode responsive protein
GI:2213418
Length = 695
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 436 GQYVGQFNHPVVGQTPYPQYHPMAGFP 516
G Y G + H + PQYHP GFP
Sbjct: 494 GHYGGYYGHYMPTPMVMPQYHPGMGFP 520
>At1g25510.1 68414.m03168 aspartyl protease family protein contains
Pfam domain, PF00026: eukaryotic aspartyl protease
Length = 483
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +1
Query: 121 MSSGMPELGSKISLISKADIRYEGRLFTVDPQECTIALASVRSFGTEDRETQYPVA-PQS 297
+ S + L I+ ISKAD++ ++T + Q+ L S + G+ + T+ + P
Sbjct: 100 VKSLITRLDLAINNISKADLKPISTMYTTEEQDIEAPLISGTTQGSGEYFTRVGIGKPAR 159
Query: 298 QVYDYILFRGSDI 336
+VY +L GSD+
Sbjct: 160 EVY-MVLDTGSDV 171
>At4g19200.1 68417.m02833 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 179
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +1
Query: 394 QMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPS-GVHNQLNKTSSMLDLIG 570
Q PP G PA G G + G P P +P AG+P+ G H+ + + +I
Sbjct: 40 QQGYPPAGGYPPA-GYPPGAYPAAPGGYPPAPGGYPPAGYPAPGAHHSGHSGGGLGGMIA 98
Query: 571 GGS 579
G +
Sbjct: 99 GAA 101
>At3g19840.1 68416.m02513 FF domain-containing protein / WW
domain-containing protein weak similarity to
transcription factor CA150b [Mus musculus] GI:6329166;
contains Pfam profiles PF01846: FF domain, PF00397: WW
domain
Length = 743
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Frame = +1
Query: 364 PSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFN-HPVVGQTPYPQYHPMAGFPSGV 525
P + P S P T P PG G +P + YP YH + G P G+
Sbjct: 16 PGLMTSPPAFPGSNP--FSTTPRPGMSAGPAQMNPGIHPHMYPPYHSLPGTPQGM 68
>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 884
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/50 (38%), Positives = 22/50 (44%)
Frame = +1
Query: 403 VPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPSGVHNQLNKTSS 552
VPP G P Y QF+HP +P P P G PS + Q SS
Sbjct: 36 VPPPTQPGGPPAWYSNQFHHP-HSPSPPPPPPPQWGPPSPHYPQGQPYSS 84
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 897
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/50 (38%), Positives = 22/50 (44%)
Frame = +1
Query: 403 VPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPSGVHNQLNKTSS 552
VPP G P Y QF+HP +P P P G PS + Q SS
Sbjct: 36 VPPPTQPGGPPAWYSNQFHHP-HSPSPPPPPPPQWGPPSPHYPQGQPYSS 84
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 364 PSMPNDPAIMQM-SVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHP 501
PS+P+ P + S PPTL + P P ++ P P P Y P
Sbjct: 405 PSLPSPPPPAPIFSTPPTLTSPPPPSPPPPVYSPPPPPPPPPPVYSP 451
>At2g21960.1 68415.m02609 expressed protein
Length = 332
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 405 TPNSGYWTSSWAVCGAV*PSSCWTNSISSVSSNGWLSKWSSQP 533
T +SG+ SS S+ ++ +S GW KWSSQP
Sbjct: 46 TASSGFDLSSLESAINKKDSNGVKEALDKLSEEGWAKKWSSQP 88
>At5g12210.2 68418.m01433 geranylgeranyl transferase type II beta
subunit, putative / RAB geranylgeranyltransferase beta
subunit, putative similar to rab geranylgeranyl
transferase GB:CAA69383 GI:1552549 from [Homo sapiens]
Length = 320
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = +2
Query: 419 VLDQLL--GSMWGSLTIQLLDKLHILS---IIQWL 508
V+D L G+ WG T+ LLDKL +S +I WL
Sbjct: 34 VMDHLRMNGAYWGLTTLDLLDKLGCVSEEEVISWL 68
>At5g12210.1 68418.m01432 geranylgeranyl transferase type II beta
subunit, putative / RAB geranylgeranyltransferase beta
subunit, putative similar to rab geranylgeranyl
transferase GB:CAA69383 GI:1552549 from [Homo sapiens]
Length = 321
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = +2
Query: 419 VLDQLL--GSMWGSLTIQLLDKLHILS---IIQWL 508
V+D L G+ WG T+ LLDKL +S +I WL
Sbjct: 35 VMDHLRMNGAYWGLTTLDLLDKLGCVSEEEVISWL 69
>At5g45350.1 68418.m05567 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 177
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 427 PAPGQYVGQFNHPVVGQTPYPQYHPMAGFPSGVH 528
P PG Y +P G P P +P AG+P G +
Sbjct: 22 PPPGAYPPA-GYPQQGYPPPPGAYPPAGYPPGAY 54
>At5g24355.1 68418.m02871 expressed protein ; expression supported
by MPSS
Length = 113
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 507 SHWMILRIWSLSNNWMVKL 451
+HW +++WSLS N VKL
Sbjct: 81 NHWETVKLWSLSENDSVKL 99
>At5g54440.1 68418.m06780 expressed protein
Length = 829
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/40 (22%), Positives = 20/40 (50%)
Frame = +1
Query: 349 VLNNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPV 468
+L + + P P+ +++ PP T +PG + + P+
Sbjct: 63 LLKGLEASPRTPSSLKVQAPPMSRTNSSPGNFESPLDRPM 102
>At5g43770.1 68418.m05353 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 187
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +1
Query: 361 VPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPS 519
VP +PN P I PP + T P+ +G QTP P++ P+ PS
Sbjct: 90 VPELPNIPEISPSETPPEVTTVPSDPPPLGP------PQTPGPEF-PVPPSPS 135
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,463,173
Number of Sequences: 28952
Number of extensions: 322391
Number of successful extensions: 910
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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