Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c10
         (623 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0550 + 18509365-18509589,18509668-18510644,18510828-185118...    30   1.7  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    29   3.0  
07_03_0633 + 20120560-20123464,20123608-20123672                       29   4.0  
04_04_1228 + 31888350-31892228,31892568-31893298,31893511-318935...    28   5.2  
03_06_0614 - 35099225-35099461,35099545-35099694,35099919-351000...    28   5.2  
05_05_0087 - 22291732-22292029,22292967-22293034,22293640-222937...    28   6.9  
10_08_1047 - 22549376-22551271                                         27   9.2  
03_02_0877 - 12072996-12073285,12074312-12074615,12074699-120748...    27   9.2  
01_07_0169 + 41650339-41651217                                         27   9.2  

>08_02_0550 +
           18509365-18509589,18509668-18510644,18510828-18511802,
           18511885-18512142,18512216-18512326,18512418-18512496,
           18512595-18512687,18512773-18512958
          Length = 967

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 30/123 (24%), Positives = 48/123 (39%)
 Frame = +3

Query: 162 QYPPEEAYTRLISHNMTVPQRIKATGDIIDDETAPNGMVSGWDYANEKFDMKVPERILVI 341
           +Y  E   T  ++    +P R     DI DD           D+   + D   PE I+ +
Sbjct: 397 RYKEETGKTIQVATGRAMPGRRFHCQDIPDDYAKEEVRTVNEDHRMYEIDFPTPEDIVYL 456

Query: 342 GQDQHVGTKAPPREIQLDNAVLPTDPGMVRVSTPPRIITLDQHYFPSADDFPHGMPNNSP 521
           G           ++IQL +    TD       +PPRI+    H   + D+ P   P ++ 
Sbjct: 457 GDAVDQIILWHKKDIQLGS----TD-------SPPRILRSLCHALRNMDEEPRDPPEDAS 505

Query: 522 PRN 530
           PR+
Sbjct: 506 PRH 508


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
 Frame = +3

Query: 360  GTKAPPREIQLDNAVLPTDPGMVR-VSTPPRIITLDQHYFPSADDFPHGMPNNSPP 524
            G   PP  I       P  PG +  V  PP I  L  H  P A   P G+    PP
Sbjct: 1096 GVAPPPPSIGAGAPPPPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPP 1151


>07_03_0633 + 20120560-20123464,20123608-20123672
          Length = 989

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 115 LISHLYVYER*ILTVCSIHPKRHILALSVTI*LCLKE*RQQVI*LMMKQLPMEWF 279
           +  HL  + R  L  CSI P  ++   ++ I + +    QQ   + MK++  EWF
Sbjct: 400 MCEHLCDHLRKCLCYCSIFPSGYLFEKNMLIHMWIASFMQQHDGIGMKEMEKEWF 454


>04_04_1228 +
           31888350-31892228,31892568-31893298,31893511-31893586,
           31894089-31894164,31894571-31894656,31895414-31895482,
           31895579-31895588,31895711-31896207
          Length = 1807

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/59 (27%), Positives = 32/59 (54%)
 Frame = +1

Query: 325 KGS*LLDKTNMLVLKHHPEKFNWITLCCQQIRVWSV*ARRHVSLPSINITSLQLMIFHM 501
           KGS L  KT   +L++H ++++W  +   + R W +    H  +P++ + S   + FH+
Sbjct: 495 KGSPLAAKTVGRLLRNHFDQYHWNRVL--ESREWEMETSNHDIMPALQL-SYDYLPFHL 550


>03_06_0614 -
           35099225-35099461,35099545-35099694,35099919-35100066,
           35100152-35100231,35100428-35100594,35100692-35100940,
           35101025-35102310,35102423-35102544,35102946-35103272
          Length = 921

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 519 PPRNIKTYRSQGDGARTTTPRPDHFNESIMTE 614
           PPRN  + RS GD +R+T  R    + S+  E
Sbjct: 341 PPRNDHSGRSSGDSSRSTASRKHDDSASLSAE 372


>05_05_0087 -
           22291732-22292029,22292967-22293034,22293640-22293723,
           22295967-22296010,22296210-22296300,22296452-22296634,
           22297594-22297637,22298122-22298355,22298452-22298712,
           22298790-22298915,22298993-22299077,22299171-22299244,
           22299988-22300186
          Length = 596

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 218 RHSHIVTDKASICLFGWILH 159
           RHS +VTD  ++  FGW L+
Sbjct: 320 RHSAVVTDSGTLLTFGWGLY 339


>10_08_1047 - 22549376-22551271
          Length = 631

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 257 FIINYITCCLYSLRHSHI-VTDKASICLFGWILHTVNIYRS 138
           F IN I C +    +S++ + D  S+C  G I H +N+Y S
Sbjct: 404 FFINMIKCDIRPDSYSYVGLLD--SLCQLGRIDHAINVYHS 442


>03_02_0877 -
           12072996-12073285,12074312-12074615,12074699-12074871,
           12075299-12075434,12076327-12076788,12076882-12077189,
           12077724-12078105
          Length = 684

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
 Frame = +3

Query: 192 LISHNMTVPQRIKATGDIIDDETAPNGMVSGWDYAN-EKFDMKVPERILVIGQDQHVGTK 368
           ++ +    P+R+   G  I       G   GW +   +K +  +    +V G D+H G K
Sbjct: 502 VVGYGNRYPKRVHHRGASIPKNGVHYGCKGGWKWRETKKPNPNIIVGAMVAGPDRHDGFK 561

Query: 369 APPREIQLDNAVLPTDPGMV 428
              +      A L  + G+V
Sbjct: 562 DVRKNYNYTEATLAGNAGLV 581


>01_07_0169 + 41650339-41651217
          Length = 292

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
 Frame = +3

Query: 165 YPPEEAYTRLISHNMTVPQRIKATGDIIDDETAPNGMVSGWDYAN-EKFDMKVPERILVI 341
           YP +EA   L +  + +   I   GD + +  A +   + W   N   +   V  + + +
Sbjct: 28  YPDKEALNALRNSGIAL---ILDVGDQLSNLAASSSNAAAWVRDNISPYYPAVNIKYIAV 84

Query: 342 GQDQHVGTKAP--PREIQLDNAVLPTDPGMVRVSTPPRIITLDQHYFPSADDFPHGMPN 512
           G +   GT     P    +++A+     G ++VST  +   +  +Y PSA  F +   N
Sbjct: 85  GNEVVGGTTESILPAMRNVNSALAAAGIGGIKVSTAVKSDVIANYYPPSAGVFAYTYMN 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,438,771
Number of Sequences: 37544
Number of extensions: 424009
Number of successful extensions: 936
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)