Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c10
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   4.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   7.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.8  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 204 NMTVPQRIKATGDIIDDETAPNGM 275
           N  +   + + GD I++   PNGM
Sbjct: 33  NDNIRNTLISNGDYIEENNMPNGM 56


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 425  GPCEHAATYHYPR 463
            GPC HA    YPR
Sbjct: 1464 GPCWHAVMTTYPR 1476


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = -3

Query: 294 HNPNLKPFHWELFHHQLYHLLPLFFEAQSY 205
           HNP  K   W L  H  + L      AQ +
Sbjct: 92  HNPRGKDALWSLVPHMAWQLSTAHLLAQLF 121


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = -3

Query: 114 FL*FISFGWIYQNTVRRQILVYFSQ 40
           F  F+SF +I+   ++  ++ YF++
Sbjct: 278 FFVFLSFAFIFATIIQFAVVHYFTK 302


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 255 HHQLYHLLPLF 223
           H+Q YH+ P+F
Sbjct: 7   HYQHYHITPVF 17


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,932
Number of Sequences: 438
Number of extensions: 4518
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)