Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c10
         (623 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07000.1 68416.m00831 DC1 domain-containing protein contains ...    29   2.5  
At4g25770.1 68417.m03709 expressed protein                             28   5.8  
At1g51470.1 68414.m05793 glycosyl hydrolase family 1 protein con...    28   5.8  
At1g47600.1 68414.m05285 glycosyl hydrolase family 1 protein con...    28   5.8  

>At3g07000.1 68416.m00831 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 574

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -3

Query: 279 KPFHWELFHHQLYHLLPLFFEAQSYCD**GEYMPLRVDTAYC 154
           +PFH EL  H LYH+L    E    C   G+Y+   +    C
Sbjct: 373 EPFHHELHPHPLYHILSA-AEKLKLCGACGKYLHYVLSCTVC 413


>At4g25770.1 68417.m03709 expressed protein
          Length = 418

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 270 GMVSGWDYANEKFDMKVPERILVIGQDQHVGT 365
           G  + W YA E+F  K P+++LV   + +  T
Sbjct: 103 GSAADWKYAAEQFVKKFPDKVLVHRSESNSAT 134


>At1g51470.1 68414.m05793 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to Myrosinase precursor (SP:P37702) [Arabidopsis
           thaliana]; similar to thioglucosidase (GI:871992)
           [Arabidopsis thaliana]
          Length = 511

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 255 ETAPNGMVSGWDYANEKFDMKVPER 329
           E A +  ++GWDY   ++  KVP+R
Sbjct: 66  EGAAHRALNGWDYFTHRYPEKVPDR 90


>At1g47600.1 68414.m05285 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to thioglucosidase (GI:871992) [Arabidopsis
           thaliana]
          Length = 511

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 255 ETAPNGMVSGWDYANEKFDMKVPER 329
           E A +  ++GWDY   ++  KVP+R
Sbjct: 66  EGAAHRALNGWDYFTHRYPEKVPDR 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,798,080
Number of Sequences: 28952
Number of extensions: 340635
Number of successful extensions: 792
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)