Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10c06
(545 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 33 0.027
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb... 31 0.084
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 30 0.26
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 29 0.45
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 28 1.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 1.8
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 27 2.4
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 27 2.4
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 26 4.2
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 26 4.2
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|... 26 4.2
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 26 4.2
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 5.5
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 25 5.5
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 25 5.5
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 25 5.5
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce... 25 5.5
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 33.1 bits (72), Expect = 0.027
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = -2
Query: 391 IPVDVKAASSSHNLTF--TFSLQFSRELVNLFSSSESRYK*YPI 266
I V V A+ +S NL F S F L+N+FSS+ S+Y+ YPI
Sbjct: 580 ISVPVSASDASSNLAFLTNMSSNFLSVLLNVFSSTPSQYR-YPI 622
>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 31.5 bits (68), Expect = 0.084
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +3
Query: 291 SDEEKRLTSSRENCNEKVKVKLCDEEAALT--STGMGRSTTTEDIDDHLMSEEDMKQSLK 464
S+EE + ++ N +EK VK+ DE A +T ++ +G+S+ D SE + S
Sbjct: 147 SNEEVGIPAT--NSSEKSNVKIADEIAEVTHSNSSIGKSSADLSSDSSSDSESNTSFSET 204
Query: 465 MAKEAIANLERDLQKMDTKSSPKS 536
+E A + D + M + PK+
Sbjct: 205 DVEEEKAEEKSDAESMAPSTPPKT 228
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 29.9 bits (64), Expect = 0.26
Identities = 17/84 (20%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = +3
Query: 87 LGEHLDTFKTLNGDFSDTTVRERKSTAQAELDHHLNQNVDDGISNGRSLHAKKPIIVKKK 266
L E L+ D D +R+R+++++ + + ++ + NG + KK +VK++
Sbjct: 42 LSESLNKKSKSESDEDDIPIRKRRASSKKNMSNSSSKKRAKVMGNGGLKNGKKTAVVKEE 101
Query: 267 IGYH-LYRDSDEEKRLTSSRENCN 335
++ + + S + KR++ + + N
Sbjct: 102 EDFNEIAKPSPKHKRVSKANGSKN 125
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 29.1 bits (62), Expect = 0.45
Identities = 20/83 (24%), Positives = 38/83 (45%)
Frame = +3
Query: 288 DSDEEKRLTSSRENCNEKVKVKLCDEEAALTSTGMGRSTTTEDIDDHLMSEEDMKQSLKM 467
DS EE RLTSSR + + E S+ S+ E + E K+++
Sbjct: 18 DSSEENRLTSSRLKKQDDSSSEEESSEEESASSSESESSEEESESEESEVEVPKKKAVAA 77
Query: 468 AKEAIANLERDLQKMDTKSSPKS 536
++++ ++ E ++ +T+S S
Sbjct: 78 SEDSESDSESSEEEEETESEEDS 100
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 27.9 bits (59), Expect = 1.0
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +3
Query: 210 GISNGRSLHAKKPIIVKKKIGYHLYRDSDEEKRLTS-SRENCNEKVKVKLCDEEAALTST 386
GI N LHA KP+I K +HL+ S L S S E+ + DE T
Sbjct: 128 GIQNTWGLHAPKPVISIIKKSHHLFSGSPLRLDLNSFSSEDNADATNSFYLDEPEFCTIK 187
Query: 387 G 389
G
Sbjct: 188 G 188
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 1.8
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +3
Query: 135 DTTVRERKSTAQAELDHHLNQNVDDGISNGRSLHAKKPIIVKKKIGYHLYRDSDEEKRLT 314
+T+ RKS+ E HH N+ D S SL + +K + HL R S +
Sbjct: 1293 ETSTSSRKSSKSGEHHHHHNEGHADSSSTRTSLAHQDS---RKSLHRHLSRSSSRASKKP 1349
Query: 315 S 317
S
Sbjct: 1350 S 1350
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.6 bits (56), Expect = 2.4
Identities = 20/87 (22%), Positives = 37/87 (42%)
Frame = +3
Query: 240 KKPIIVKKKIGYHLYRDSDEEKRLTSSRENCNEKVKVKLCDEEAALTSTGMGRSTTTEDI 419
KKP KK + + +E+ + E +EK V+ + + S +D+
Sbjct: 75 KKPSKKSKKAKANAFEAFADEQSVEEEEEEDSEK-PVRKNKKSSKKASPKNAFDALADDM 133
Query: 420 DDHLMSEEDMKQSLKMAKEAIANLERD 500
DD + EE+ + S K K+ + +D
Sbjct: 134 DDLSLDEEESESSEKSKKKKKKSKSKD 160
>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 343
Score = 26.6 bits (56), Expect = 2.4
Identities = 24/87 (27%), Positives = 37/87 (42%)
Frame = +3
Query: 213 ISNGRSLHAKKPIIVKKKIGYHLYRDSDEEKRLTSSRENCNEKVKVKLCDEEAALTSTGM 392
I R L + G H DSDE K SS E+ +E + K ++ +L +
Sbjct: 258 IPGRRPLSISSDLYNDSNSGSHSNDDSDETKLKQSSTESSSELLDEKDKFDKNSLNDPFV 317
Query: 393 GRSTTTEDIDDHLMSEEDMKQSLKMAK 473
T + +H +SEE K S K ++
Sbjct: 318 ---TIRKSSYEHEISEEHKKHSKKRSE 341
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 378 TSTGMGRSTTTEDIDDHLMSEE 443
+ G+ ST ED+D+H +S+E
Sbjct: 658 SQAGINPSTKLEDLDEHTLSDE 679
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 4.2
Identities = 21/92 (22%), Positives = 41/92 (44%)
Frame = +3
Query: 240 KKPIIVKKKIGYHLYRDSDEEKRLTSSRENCNEKVKVKLCDEEAALTSTGMGRSTTTEDI 419
+KP + KKK E T +EN ++ + +EEA + R+T+ +
Sbjct: 297 RKPTLRKKKS----IPKKQNESSSTIQKENTVQQ-EASSSEEEAVKSLPETQRTTSRIET 351
Query: 420 DDHLMSEEDMKQSLKMAKEAIANLERDLQKMD 515
+ + EE+M+ + +E + N E + + D
Sbjct: 352 QEEEIKEEEMEGEEEEEEEEVPNYESENELED 383
>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 291 SDEEKRLTSSRENCNEKVKVKLCDEEAALTSTGMGR 398
SD+E+ + C EK K K C+ E + G GR
Sbjct: 74 SDDEESCEKKKPKCCEKKKPKCCESE---QNNGCGR 106
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 25.8 bits (54), Expect = 4.2
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 174 ELDHHLNQNVDDGISN 221
E+DHH+ + +DD +SN
Sbjct: 394 EIDHHVQEIIDDVVSN 409
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.4 bits (53), Expect = 5.5
Identities = 19/88 (21%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Frame = +3
Query: 279 LYRDSDEEKRLTSSRENCNEKVKVKLCDEEAALTSTGMGRSTTTEDIDDHLMSEEDMKQS 458
L + + +KRLT+ E+ + +++ ++ + LTS + TE+++++ + S
Sbjct: 277 LEEEVETQKRLTALWESKSSELQSEVAALQEKLTSQQSLYNNVTEELNNNKQQLLISENS 336
Query: 459 LKMAKEAIANLERDLQKM-DTKSSPKSA 539
L+ +E ++ +LQ + + K++ SA
Sbjct: 337 LRELQEKYDSVVSELQVVKENKNTSVSA 364
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 25.4 bits (53), Expect = 5.5
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 360 DEEAALTSTGMGRSTTTEDIDDHLMSE-EDMKQSLKMAKEAIANLERDLQKMDTK 521
+ + L + + + ED HL E D+KQ + + LERD++ +D+K
Sbjct: 27 ESTSVLYTIDLDMESDVEDAFFHLDRELHDLKQQISSQSKQNFVLERDVRYLDSK 81
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 5.5
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Frame = +3
Query: 225 RSLHAKKPIIVKKKIGYHLYRDSDEEKRLTSSRENCNEKVKVKLCDEEAALTSTGMGRST 404
+S H+ K ++ Y L + SD + L + ++ N+ + + +A + S ++
Sbjct: 163 KSAHSTKTVVDALYKSY-LEKQSDYSELLDNYKKQLNKASESCKGNYQACIESRSTLITS 221
Query: 405 TTEDIDDH--LMSEEDMKQSLKMAKEAIANLE 494
I++ L+SEE+ +SLK + I+NLE
Sbjct: 222 LESLIEEQKKLLSEEE--ESLKSVESIISNLE 251
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 25.4 bits (53), Expect = 5.5
Identities = 17/90 (18%), Positives = 35/90 (38%)
Frame = +3
Query: 78 PAQLGEHLDTFKTLNGDFSDTTVRERKSTAQAELDHHLNQNVDDGISNGRSLHAKKPIIV 257
PA++ H ++ +T D + E++ L L +++ + + K P+
Sbjct: 796 PAEIKRHKESSETKPVDKEEVKKNEKEKDDPMRLAQQLLESLAPDFALHENTQQKSPVEK 855
Query: 258 KKKIGYHLYRDSDEEKRLTSSRENCNEKVK 347
KK+ Y +E +S+ VK
Sbjct: 856 PKKLRKDRYASVEEFDYFSSTEHASKRSVK 885
>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 5.5
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Frame = +3
Query: 273 YHLYRDSDEEKRLTSSRENCNEKVKVKL--CDEEAALTSTGMGRSTTTEDIDDHLMSEE- 443
Y LY + S + C + V + C E L TG G+ + + DH + +E
Sbjct: 492 YALYSGWPGDPTFRKSNDVCIALIGVSIIACGIEFLLDKTGFGQFNASFNNHDHEVEDEQ 551
Query: 444 ---DMKQSLKMAKEAIA 485
D+K +L +++A A
Sbjct: 552 EMTDIKPALPSSQQADA 568
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,958,226
Number of Sequences: 5004
Number of extensions: 34554
Number of successful extensions: 134
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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