Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10c04
(634 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 27 1.7
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 27 2.3
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 27 3.0
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi... 26 3.9
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 26 5.2
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 25 6.9
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po... 25 6.9
SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch... 25 6.9
SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 6.9
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 25 6.9
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 25 9.1
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 205 VVTQIAYITEFTLKCDNTLPENYGLYAEVDGKSL 306
VV + Y+TEF+ T P ++GL +DG SL
Sbjct: 369 VVFDLKYVTEFS-----TSPNDFGLIPVIDGSSL 397
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 27.1 bits (57), Expect = 2.3
Identities = 23/74 (31%), Positives = 33/74 (44%)
Frame = +1
Query: 331 KYQISWTEEPAKARSGVHQINILDEEGWASLRRARRADPAASVAPLLAIQLSHPGSYSGP 510
+Y + E P + V ++N D+ SL A P APL+ + P +YS
Sbjct: 1296 RYGLKLVEAPIHEIAAVGELNPFDQVSIISL--ALDPPPIPERAPLV----NDPVNYSKN 1349
Query: 511 WVNSEILATFISIL 552
W N +IL F IL
Sbjct: 1350 WWNVKILEHFDFIL 1363
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +1
Query: 136 SICAESCQNPKVEASYFTSLDATVVTQIAYITEFTLKCDNTLPENYGLY 282
++C SCQN + + F +D + + F L+ D LP++ +Y
Sbjct: 163 NVCGPSCQNQRFQRHEFAKVDVFLTEK----KGFGLRADANLPKDTFVY 207
>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 624
Score = 26.2 bits (55), Expect = 3.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 531 QYLGVHPWPGVAARMTKLYGE 469
++ HPWPG R T+ Y E
Sbjct: 278 KFFAQHPWPGTRHRETREYTE 298
>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 588
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 106 IYIITIALIGSICAESCQNPKVEASYFTSLDATVV 210
IY++TIALI + ++S +N +LD +VV
Sbjct: 172 IYVLTIALINYLISKSLKNSIFNPLLTWTLDISVV 206
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 25.4 bits (53), Expect = 6.9
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Frame = +1
Query: 304 LTAARIGENKYQISWTEEPAK--------ARSG-VHQINILDEEGWASLRRARRADPAAS 456
+ A +G N +++ + E+ +K ARSG + L +E + +RAR+ DP S
Sbjct: 283 MKAMELGHNSWRLEYGEDRSKRMRNKSPMARSGRFNDAESLGQEDKPNFKRARKIDP-RS 341
Query: 457 VAPLLAI 477
V P A+
Sbjct: 342 VRPGAAL 348
>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 521
Score = 25.4 bits (53), Expect = 6.9
Identities = 23/110 (20%), Positives = 49/110 (44%)
Frame = +1
Query: 49 FKIRFTFKVTNNKMVTKSFIYIITIALIGSICAESCQNPKVEASYFTSLDATVVTQIAYI 228
F+ +TF + KM+ + + + +I + + Y TS+ +T + Q ++
Sbjct: 392 FRNAYTFYHQSQKMIAIGQAFYNATSNLSAIVDQHIPGALTCSQYPTSVASTQLVQTSHF 451
Query: 229 TEFTLKCDNTLPENYGLYAEVDGKSLTAARIGENKYQISWTEEPAKARSG 378
T +L N + E+ +Y+ S+ ++ I + IS + A A +G
Sbjct: 452 TSTSLSAVN-ISESV-VYSYTSSSSMPSSAI--PSFNISLISQNAVANAG 497
>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
Spo14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 32 NCSLKFLKLDLPLRSQITKWSQKV 103
+CS++F+ LDL SQ+ K S V
Sbjct: 278 DCSIRFMSLDLTKLSQVYKHSLPV 301
>SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 212
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 117 DNINKTFCDHFVICDLKGKSNFKNLRLQFSLLYSRP 10
D I K++ + + DLKG S F + +LY+ P
Sbjct: 71 DEIRKSYGEKKITIDLKGTSFFGKSPQEAKVLYATP 106
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 114 NINKTFCDHFVICDLKGKSNFKNLRLQFSLLYSR 13
N N + D + C L S+F+N L + +LY +
Sbjct: 498 NYNNSAIDSYAKCTLNLDSDFENGILTYEILYKK 531
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 25.0 bits (52), Expect = 9.1
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = -2
Query: 204 RGI*TSEI*SFNFRVLTGFGANTADKSDCDNINKTFCDHFVICDLKGKSNFKNLRLQFSL 25
+GI S SF+ +V +GF + T F I + +S F+NL QFSL
Sbjct: 276 QGIPNSSFSSFS-QVASGFSQSQNVNDPSSIFGPTVASGFGIQNQPQQSAFQNLNTQFSL 334
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,540
Number of Sequences: 5004
Number of extensions: 44208
Number of successful extensions: 128
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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