BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov10c04 (634 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 27 1.7 SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 27 2.3 SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 27 3.0 SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi... 26 3.9 SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 26 5.2 SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 25 6.9 SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po... 25 6.9 SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch... 25 6.9 SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 6.9 SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 25 6.9 SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 25 9.1 >SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1253 Score = 27.5 bits (58), Expect = 1.7 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +1 Query: 205 VVTQIAYITEFTLKCDNTLPENYGLYAEVDGKSL 306 VV + Y+TEF+ T P ++GL +DG SL Sbjct: 369 VVFDLKYVTEFS-----TSPNDFGLIPVIDGSSL 397 >SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual Length = 1496 Score = 27.1 bits (57), Expect = 2.3 Identities = 23/74 (31%), Positives = 33/74 (44%) Frame = +1 Query: 331 KYQISWTEEPAKARSGVHQINILDEEGWASLRRARRADPAASVAPLLAIQLSHPGSYSGP 510 +Y + E P + V ++N D+ SL A P APL+ + P +YS Sbjct: 1296 RYGLKLVEAPIHEIAAVGELNPFDQVSIISL--ALDPPPIPERAPLV----NDPVNYSKN 1349 Query: 511 WVNSEILATFISIL 552 W N +IL F IL Sbjct: 1350 WWNVKILEHFDFIL 1363 >SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 798 Score = 26.6 bits (56), Expect = 3.0 Identities = 13/49 (26%), Positives = 24/49 (48%) Frame = +1 Query: 136 SICAESCQNPKVEASYFTSLDATVVTQIAYITEFTLKCDNTLPENYGLY 282 ++C SCQN + + F +D + + F L+ D LP++ +Y Sbjct: 163 NVCGPSCQNQRFQRHEFAKVDVFLTEK----KGFGLRADANLPKDTFVY 207 >SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schizosaccharomyces pombe|chr 1|||Manual Length = 624 Score = 26.2 bits (55), Expect = 3.9 Identities = 9/21 (42%), Positives = 12/21 (57%) Frame = -2 Query: 531 QYLGVHPWPGVAARMTKLYGE 469 ++ HPWPG R T+ Y E Sbjct: 278 KFFAQHPWPGTRHRETREYTE 298 >SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT |Schizosaccharomyces pombe|chr 1|||Manual Length = 588 Score = 25.8 bits (54), Expect = 5.2 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = +1 Query: 106 IYIITIALIGSICAESCQNPKVEASYFTSLDATVV 210 IY++TIALI + ++S +N +LD +VV Sbjct: 172 IYVLTIALINYLISKSLKNSIFNPLLTWTLDISVV 206 >SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces pombe|chr 1|||Manual Length = 369 Score = 25.4 bits (53), Expect = 6.9 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 9/67 (13%) Frame = +1 Query: 304 LTAARIGENKYQISWTEEPAK--------ARSG-VHQINILDEEGWASLRRARRADPAAS 456 + A +G N +++ + E+ +K ARSG + L +E + +RAR+ DP S Sbjct: 283 MKAMELGHNSWRLEYGEDRSKRMRNKSPMARSGRFNDAESLGQEDKPNFKRARKIDP-RS 341 Query: 457 VAPLLAI 477 V P A+ Sbjct: 342 VRPGAAL 348 >SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces pombe|chr 3|||Manual Length = 521 Score = 25.4 bits (53), Expect = 6.9 Identities = 23/110 (20%), Positives = 49/110 (44%) Frame = +1 Query: 49 FKIRFTFKVTNNKMVTKSFIYIITIALIGSICAESCQNPKVEASYFTSLDATVVTQIAYI 228 F+ +TF + KM+ + + + +I + + Y TS+ +T + Q ++ Sbjct: 392 FRNAYTFYHQSQKMIAIGQAFYNATSNLSAIVDQHIPGALTCSQYPTSVASTQLVQTSHF 451 Query: 229 TEFTLKCDNTLPENYGLYAEVDGKSLTAARIGENKYQISWTEEPAKARSG 378 T +L N + E+ +Y+ S+ ++ I + IS + A A +G Sbjct: 452 TSTSLSAVN-ISESV-VYSYTSSSSMPSSAI--PSFNISLISQNAVANAG 497 >SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Schizosaccharomyces pombe|chr 2|||Manual Length = 395 Score = 25.4 bits (53), Expect = 6.9 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +2 Query: 32 NCSLKFLKLDLPLRSQITKWSQKV 103 +CS++F+ LDL SQ+ K S V Sbjct: 278 DCSIRFMSLDLTKLSQVYKHSLPV 301 >SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 212 Score = 25.4 bits (53), Expect = 6.9 Identities = 12/36 (33%), Positives = 19/36 (52%) Frame = -2 Query: 117 DNINKTFCDHFVICDLKGKSNFKNLRLQFSLLYSRP 10 D I K++ + + DLKG S F + +LY+ P Sbjct: 71 DEIRKSYGEKKITIDLKGTSFFGKSPQEAKVLYATP 106 >SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 1687 Score = 25.4 bits (53), Expect = 6.9 Identities = 11/34 (32%), Positives = 18/34 (52%) Frame = -2 Query: 114 NINKTFCDHFVICDLKGKSNFKNLRLQFSLLYSR 13 N N + D + C L S+F+N L + +LY + Sbjct: 498 NYNNSAIDSYAKCTLNLDSDFENGILTYEILYKK 531 >SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces pombe|chr 2|||Manual Length = 475 Score = 25.0 bits (52), Expect = 9.1 Identities = 19/60 (31%), Positives = 27/60 (45%) Frame = -2 Query: 204 RGI*TSEI*SFNFRVLTGFGANTADKSDCDNINKTFCDHFVICDLKGKSNFKNLRLQFSL 25 +GI S SF+ +V +GF + T F I + +S F+NL QFSL Sbjct: 276 QGIPNSSFSSFS-QVASGFSQSQNVNDPSSIFGPTVASGFGIQNQPQQSAFQNLNTQFSL 334 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,307,540 Number of Sequences: 5004 Number of extensions: 44208 Number of successful extensions: 128 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 125 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 128 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 281707720 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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