Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c03
         (643 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g42530.1 68416.m04410 Ulp1 protease family similar to At5g281...    33   0.12 
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi...    29   2.0  
At5g05240.1 68418.m00560 expressed protein similar to unknown pr...    29   2.6  
At5g48320.1 68418.m05969 DC1 domain-containing protein contains ...    29   3.5  
At5g07225.1 68418.m00824 zinc finger (C3HC4-type RING finger) fa...    28   4.6  
At4g28960.1 68417.m04137 hypothetical protein contains Pfam prof...    28   4.6  
At4g16144.1 68417.m02448 expressed protein                             28   4.6  
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex...    28   6.1  
At5g24800.1 68418.m02928 bZIP transcription factor family protei...    27   8.0  
At2g04500.1 68415.m00455 DC1 domain-containing protein contains ...    27   8.0  
At1g56340.1 68414.m06476 calreticulin 1 (CRT1) identical to calr...    27   8.0  

>At3g42530.1 68416.m04410 Ulp1 protease family similar to At5g28170,
           At1g35110, At1g44880, At4g19320, At5g36020, At4g03970,
           At3g43010, At2g10350; contains Pfam profile PF02902:
           Ulp1 protease family, C-terminal catalytic domain
          Length = 889

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +3

Query: 267 SDEPKVDTSKSKLSADAKEWYPANYTSQALPA-YNTEPAPYRPSRPSVQGRLRQAQDQNP 443
           S E  +   +  + ADA E  PA ++   LP  +N+E      +   V G+L+ + D+ P
Sbjct: 615 SVEKLLPLHQDHIIADASERVPATHSGLDLPKEHNSEELQTNANETDVYGKLQDSLDREP 674

Query: 444 YNLDDMSYSLEEA 482
            +  D+   +E++
Sbjct: 675 ASHSDIDLPIEQS 687


>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
           protein contains similarity to 67kD chloroplastic
           RNA-binding protein, P67.1 [Raphanus sativus]
           GI:9755886; contains Pfam profile PF01535: PPR repeat
          Length = 711

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 7/128 (5%)
 Frame = +3

Query: 207 RGRGWQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPA-- 380
           + R  ++N     L++PK + +EP + T    LS   K    A    Q      ++P   
Sbjct: 34  QSRSRKLNISCSSLKQPKTLEEEP-ITTKTPSLSEQLKP-LSATTLRQEQTQILSKPKSV 91

Query: 381 ---PYRPSRP--SVQGRLRQAQDQNPYNLDDMSYSLEEAENMDLRENIANLITVMCEITF 545
              P RP R   S+Q + R A   NP   D  +++L+   N  +    +  ++++ EI  
Sbjct: 92  WVNPTRPKRSVLSLQRQKRSAYSYNPQIKDLRAFALK--LNSSIFTEKSEFLSLLDEIPH 149

Query: 546 DPGKFDTL 569
            P + + L
Sbjct: 150 PPNRDNAL 157


>At5g05240.1 68418.m00560 expressed protein similar to unknown
           protein (gb AAD32815.2)
          Length = 530

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 165 IVKMNNGDISAPKGRGRGWQMNNQARELRRPKAVSDEPKVD 287
           ++  ++G I APK RGR  ++NN A   ++ K +  + +VD
Sbjct: 186 LISSSHGGIPAPKKRGRKTKINNDAAVAKKRK-IERKEEVD 225


>At5g48320.1 68418.m05969 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 977

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = -2

Query: 573 HTRCQTCPGQRLSHT*QLSSLLCSPVDP--CFQLLQVNKTCHPNCMDFDLELDEVYLVQR 400
           H RCQTC G+      +   ++   + P    QL+ +N      C   D +L+EV+    
Sbjct: 462 HIRCQTCNGENHGEYEKAPVVIKHTLHPKHSLQLVLLNGDTTRECYCCDKDLEEVF-YYC 520

Query: 399 GEMVYMGQVQCCKR 358
               Y   + C KR
Sbjct: 521 SACDYAMNIACIKR 534


>At5g07225.1 68418.m00824 zinc finger (C3HC4-type RING finger)
           family protein similar to SP:O54965 RING finger protein
           13 {Mus musculus} RING zinc finger protein
          Length = 234

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +3

Query: 381 PYRPSRPSVQGRLRQAQDQNPYNLDDMSYSLEEAE--NMDLRENIA-NLITVMCEITFDP 551
           PY  S  S  G      + N ++LD++   +EE E  N  + E +    I+ +  I F P
Sbjct: 122 PYNDSPHSFSGYEHLEDESNQHSLDEIIERIEERERGNTSVGEGLTEGQISQLPTIKFKP 181

Query: 552 GKFDTLC 572
              D +C
Sbjct: 182 SLEDKMC 188


>At4g28960.1 68417.m04137 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 493

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = -3

Query: 491 HVFSFFK*IRHVIQIVWILILSLTKSTLYRGARWSIWG---RFSVVSG*RLRSVICRV 327
           H+F   K   H+IQ +W+L++   K+ L R   + + G   R+S+     L  + CRV
Sbjct: 160 HIFHMPKEPNHMIQGMWMLMVRTAKTELARECWFVVNGVPIRYSIREHALLTGLNCRV 217


>At4g16144.1 68417.m02448 expressed protein
          Length = 390

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +3

Query: 222 QMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPYRPSRP 401
           + N    +L R +  S +   D      S+DA EW PA+  S + P  N +P P   S+P
Sbjct: 95  EFNQLVDKLNRVEDESRQDGSDLPVVSYSSDAVEWPPAHKASYSRPDIN-KPLP--TSQP 151

Query: 402 S 404
           S
Sbjct: 152 S 152


>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
           extensin family protein (LRX1) similar to extensin-like
           protein [Lycopersicon esculentum]
           gi|5917664|gb|AAD55979; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 744

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = +3

Query: 219 WQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYP----ANYTSQALPAYNTEPAPY 386
           ++M+ + R L  P  V   P    S SK+S   + + P    ++  S ++ AY+  P PY
Sbjct: 388 FKMSPEVRTLPPPIYVYSSPPPPPS-SKMSPTVRAYSPPPPPSSKMSPSVRAYSPPPPPY 446

Query: 387 RPSRPSVQ 410
               PSV+
Sbjct: 447 SKMSPSVR 454


>At5g24800.1 68418.m02928 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription
           factor; identical to cDNA bZIP protein BZO2H2
           GI:10954096
          Length = 277

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 513 LLCSPVDPCFQLLQVNKTC 457
           L  SP+DPCF L+  + TC
Sbjct: 24  LTTSPLDPCFDLMNRDYTC 42


>At2g04500.1 68415.m00455 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 495

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
 Frame = -2

Query: 510 LCSPVDPCFQLLQVNKTCHPNCMDFDLELDEVYLVQRGE---MVYMGQVQCCKRVA 352
           L  P DP  ++L  N    P C   +L     +L++R      +Y   + CC   A
Sbjct: 430 LIDPRDPAHEVLPNNGVTRPFCFHCELRCKFPFLIRRATEEFTLYYCSLNCCLEAA 485


>At1g56340.1 68414.m06476 calreticulin 1 (CRT1) identical to
           calreticulin (crt1) GI:2052379 [Arabidopsis thaliana]
          Length = 425

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
 Frame = +3

Query: 252 RPKAVSDEPK-VDTSKSKLSADAKEWYPANYTSQALP--AYNTEPAPYRPSRPSVQGRLR 422
           +P    D PK +  + +K   D  +     +T+  +P   YN E  P +   P+ +G+ +
Sbjct: 235 KPAGYDDIPKEIPDTDAKKPEDWDDEEDGEWTAPTIPNPEYNGEWKPKKIKNPAYKGKWK 294

Query: 423 QAQDQNPYNLDD 458
                NP   DD
Sbjct: 295 APMIDNPEFKDD 306


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,662,694
Number of Sequences: 28952
Number of extensions: 320311
Number of successful extensions: 941
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)