Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10c01
(717 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc... 156 3e-39
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom... 77 2e-15
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo... 76 4e-15
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 49 6e-07
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 29 0.88
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 28 1.5
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 2.7
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 27 3.5
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 27 3.5
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 26 4.7
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 26 6.2
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 25 8.2
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||... 25 8.2
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 8.2
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 8.2
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 25 8.2
>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 479
Score = 156 bits (379), Expect = 3e-39
Identities = 78/173 (45%), Positives = 111/173 (64%), Gaps = 7/173 (4%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRS---KRRFNDILNTVD 252
+NY NK+ LAPMVRIG LPMRLLAL+YGA++V+ E++D L +R ND +N +D
Sbjct: 4 LNYSNKVCLAPMVRIGELPMRLLALRYGANLVWGPEIVDKALLSGTPVERVVNDRINCID 63
Query: 253 YVDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIK 432
+V ++FR E +++ QLG+ A++ AKLV +DVA ID+N GCPK FS+
Sbjct: 64 FVKPPSNKVLFRVHPLEANRLIFQLGSASPELAVEAAKLVANDVAGIDLNCGCPKHFSVH 123
Query: 433 GGMGVALLSKPDKAYQILKTLVDNLSIP----VTCKIRILKTPEATLELVNKL 579
GMG LL D+ IL LV+ + P ++CKIR+L+T E TL+LV ++
Sbjct: 124 AGMGAGLLKNQDRLVSILDALVNEIGKPYKISISCKIRLLETKEDTLKLVERI 176
>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 326
Score = 77.4 bits (182), Expect = 2e-15
Identities = 58/169 (34%), Positives = 81/169 (47%), Gaps = 2/169 (1%)
Frame = +1
Query: 70 FPINMNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTV 249
F IN I APMVR LP R L Y DIVYT ++ +FL K R+ D
Sbjct: 12 FEINKGKRPVHIAAPMVRYSKLPFRQLVRDYNTDIVYTPMILAKEFLHPKGRYFD----- 66
Query: 250 DYVDQTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSI 429
F T + + ++LQ G D K A+LV V I IN GCP+ ++I
Sbjct: 67 -----------FSTNDADAS-LILQFGVDDPVILEKAAQLVGPYVDGIGINCGCPQTWAI 114
Query: 430 KGGMGVALLSKPDKAYQILKTLVDNL--SIPVTCKIRILKTPEATLELV 570
+ G+G ALL +P+K +++++ + L S KIRI K T L+
Sbjct: 115 QEGIGSALLDEPEKVHKLVRAVKSTLGESFCTEVKIRIAKDLNKTRHLM 163
>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 76.2 bits (179), Expect = 4e-15
Identities = 55/162 (33%), Positives = 77/162 (47%)
Frame = +1
Query: 97 KIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVDQTDGT 276
K ILAPMV LP R+LA + GAD+ Y+ F S+ N + +T
Sbjct: 19 KRILAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESEDYRNKVFST---------- 68
Query: 277 IVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCPKEFSIKGGMGVALL 456
RT EE+ ++ G D LK AK+ A+D+N+GCP+ + KG G L
Sbjct: 69 ---RTIPEERPLIIQFCGN-DPEIMLKAAKIAAPYCDAVDVNLGCPQGIAKKGKYGSFLQ 124
Query: 457 SKPDKAYQILKTLVDNLSIPVTCKIRILKTPEATLELVNKLI 582
+ I+ L LSIPVT KIRI P+ TL+ ++
Sbjct: 125 ENWNLIESIITKLHTELSIPVTAKIRIFPDPQKTLDYAKMIL 166
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 49.2 bits (112), Expect = 6e-07
Identities = 41/157 (26%), Positives = 79/157 (50%), Gaps = 5/157 (3%)
Frame = +1
Query: 82 MNYENKIILAPMVRIGTLPMRLLALKYGADIVYTEELIDWKFLRSKRRFNDILNTVDYVD 261
+++ ++ ILAP+ +G P R L GAD Y+E + + ++ + ++ ++Y
Sbjct: 235 IDWRDRKILAPLTTVGNPPFRRLCGSLGADTFYSEMAMCYPLMQGHQPEWALVRGLNYER 294
Query: 262 QTDGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHD---VAAIDINMGCPKEFSIK 432
+ + R + + +QL T +A K A+++ V +D+N GCP + +
Sbjct: 295 E-----MMR--GGRRGILGVQLATGKLWQATKTAQVIAEQCDGVDFLDLNCGCPIDLVFR 347
Query: 433 GGMGVALLSKPDKAYQILKTLVDNLS--IPVTCKIRI 537
G G +LL P + + L+ + D +S IPVT K+R+
Sbjct: 348 QGAGSSLLENPGRLLRNLQGM-DAVSGQIPVTVKLRM 383
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 28.7 bits (61), Expect = 0.88
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = -3
Query: 118 PLAQVLFYFRNSCLW 74
PLAQ LF FRNS LW
Sbjct: 301 PLAQALFAFRNSDLW 315
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +1
Query: 178 YTEELIDWKFLRSKRRFNDILNTVDYVDQTDGTIVFRTCEEE 303
YT+E I+W F+ ND+ T+D +++++ +F +E+
Sbjct: 498 YTQERIEWDFIDYG---NDLQPTIDAIEKSEPIGIFSCLDED 536
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 2.7
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = -2
Query: 455 NSATPMPPFIENSFGHPILISIAATSC-----STNLATFKALASSHVPSCKTTFFFSSSQ 291
+S++ +P I S P+ +S ++ S STNL T + ++ + ++ F+S+S
Sbjct: 240 SSSSVLPTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGSTTTTGSATVSSSPFYSNSS 299
Query: 290 VRNTIVP 270
V T VP
Sbjct: 300 VIPTSVP 306
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +1
Query: 7 IHYLIRRCRFKTFIT*SILLQFPINMNYENKIILAPMVRIGTLPMRLLALKYGADI 174
+HYLIRRC T I I F N N + +++ + + +P L YG +
Sbjct: 851 VHYLIRRCEALTNIINRI--SFRNNPNMDGEVLNELNISLLEIPNLRLQAFYGITV 904
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 193 IDWKFLRSKRRFNDILNTVDYVDQTDGTIVF 285
+ + F+ +K ND+ N YVD +D I+F
Sbjct: 191 LPFSFMPAKANVNDLFNISAYVDTSDLPILF 221
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 461 FDNSATPMPPFIENSFGHPILISIAATSCSTNLATFKALASSH 333
F +SAT F S G PI S+ +TS N A+ +SS+
Sbjct: 299 FPSSATNSFSFEHGSAGFPIPGSVPSTSYHANTASEDGFSSSY 341
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 6.2
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -2
Query: 467 SGFDNSATPMPPFIENSFGHPILISIAATSCSTNLATFKALASSHVPSCKTTFFFS 300
SGF +S +P P S+A+++ STNL K L + S +FS
Sbjct: 207 SGFPSSLNGIPIASPPLATSPTSFSLASSASSTNLGGSKGLLFQQMTSENNRDYFS 262
>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 323
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 193 IDWKFLRSKRRFNDILNTVDYVDQTDGTIVFRTC 294
ID +F RRF+ + +D +DQ TI R+C
Sbjct: 193 IDQRFNSIDRRFDSMEQRLDSMDQKMETIDARSC 226
>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 193 IDWKFLRSKRRFNDILNTVDYVDQTDGTIVFRTC 294
ID +F RRF+ + +D +DQ TI R+C
Sbjct: 193 IDQRFNSIDRRFDSMEQRLDSMDQKMETIDARSC 226
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 25.4 bits (53), Expect = 8.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 447 HTHATFYRKFFWASHINIY 391
HT T + K F+ASH+ +
Sbjct: 164 HTKTTIFEKVFYASHLGFF 182
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 8.2
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 211 RSKRRFNDILNTVDYVDQTDGTIVFRTCEE-EKKKVVLQ 324
R K RF +LN + VD T + + CE EK+K L+
Sbjct: 1334 RWKLRFQSVLNKYERVDPTQLEELKKNCEALEKEKQELE 1372
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 8.2
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +1
Query: 268 DGTIVFRTCEEEKKKVVLQLGTCDEARALKVAKLVEHDVAAIDINMGCP 414
DG F+T EK + + C A ++ + + D A I MG P
Sbjct: 51 DGREYFKTKNNEKTGIFVPFDKCKLASSISSSPSPKIDGTAASIGMGFP 99
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,952,676
Number of Sequences: 5004
Number of extensions: 59961
Number of successful extensions: 161
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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