Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b24
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    35   0.011
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa...    33   0.045
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    31   0.10 
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    29   0.42 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   2.2  
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    27   2.9  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   5.1  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   5.1  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   6.8  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    25   9.0  
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    25   9.0  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   9.0  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    25   9.0  

>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 34.7 bits (76), Expect = 0.011
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
 Frame = +3

Query: 258 LQRRINVLENDNMRLKLDATRNNENIAFR---DDDKLDLLQKIAELNKQKSQLMHHVFMV 428
           LQ+R+  LE +N + K D+T    N+  +    + ++D L+K  E NKQ   L     + 
Sbjct: 625 LQKRLQTLEEENNKAKEDSTSKTSNLLEQLKMTEAEVDSLRKENEENKQVIALKESELVK 684

Query: 429 SCENRNLWNK 458
           S +N+ L N+
Sbjct: 685 SNDNKLLLNE 694



 Score = 30.3 bits (65), Expect = 0.24
 Identities = 19/87 (21%), Positives = 39/87 (44%)
 Frame = +3

Query: 255 LLQRRINVLENDNMRLKLDATRNNENIAFRDDDKLDLLQKIAELNKQKSQLMHHVFMVSC 434
           + +  ++ L  +N   K         +   +D+KL L ++I  LN Q SQL   +  V+ 
Sbjct: 656 MTEAEVDSLRKENEENKQVIALKESELVKSNDNKLLLNEQIESLNDQLSQLKTEMESVTT 715

Query: 435 ENRNLWNKISTIKNCNKPNKENVKNPL 515
              +L + +S +K  +    +++   L
Sbjct: 716 SKESLADYLSNLKERHNDELDSLNKKL 742


>SPBC13E7.06 |msd1|mug172|spindle pole body protein
           Msd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 331

 Score = 32.7 bits (71), Expect = 0.045
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
 Frame = +3

Query: 231 HAMRDRCLLLQRRINVLE-NDNMRLK----LDATRNNENIAFRDDDKLDLLQKIAELNKQ 395
           H +RD C ++     +L   D  RL+    LDA +NNE    RD++ +  L+   EL + 
Sbjct: 39  HDIRDNCNIVNIIYRLLRATDEERLEKESLLDAIKNNEYEKQRDNNTIKRLKNELELYQN 98

Query: 396 KSQL-MHHVFMVSCENRNLWNKISTIKNCNKPNKENVK 506
           + QL ++ V  +  +   L  +   +K+ N  N+  +K
Sbjct: 99  ECQLQLNKVRTLERDQAELITQNKGLKDVNAKNELTLK 136


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +3

Query: 246 RCLLLQRRINVLENDNMRLKLDATRNNENIAFRDDDKLDLLQKIAELNKQKSQLMHHV 419
           RC  L R I++L+N   +LK+     N +I   D     L QK+ +L K +  L++ +
Sbjct: 443 RCDQLNREIDILQNHVEKLKMSLKNTNSDITGED----VLQQKLKQLAKDRGNLLNEL 496


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 306 LDATRNNENIAFRDDDKLDLLQKIAEL-NKQKSQLMHHVFMVSCENRNLWNKISTIKN 476
           L++  N  N  +   + +D L K  E+ + +K +   H+  +  E  NLWNK+    N
Sbjct: 225 LESHTNRPNDVYVTQELIDQLCKQKEVFSAEKEKRSDHLKSIQSEVSNLWNKLQVSPN 282


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
 Frame = +3

Query: 261 QRRINVLENDNMRLKLDAT--RNNENIAFRDDDKLDLLQKIAELNKQKSQL 407
           + +++ L+  N +L LD    R++ N+A  D+D+  +L ++AEL+K    L
Sbjct: 849 ESKVSELKEVNGKLSLDLKNLRSSLNVAISDNDQ--ILTQLAELSKNYDSL 897


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 25/85 (29%), Positives = 41/85 (48%)
 Frame = +3

Query: 258 LQRRINVLENDNMRLKLDATRNNENIAFRDDDKLDLLQKIAELNKQKSQLMHHVFMVSCE 437
           L   +  LE ++++ +  AT+ NEN   R   KL     + E +KQ  Q  H +      
Sbjct: 524 LHEELRSLEEESIK-ESSATQQNENQHKRSSRKL-----LYE-DKQAIQEAHTINT---- 572

Query: 438 NRNLWNKISTIKNCNKPNKENVKNP 512
            R LW + + I+  N  ++ENV +P
Sbjct: 573 KRKLWPQSTLIQAPNSDDEENVPSP 597


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 360  DLLQKIAELNKQKSQLMHHVFMVSCENRNL 449
            D+LQ + E NKQ S  +H  F +  E RN+
Sbjct: 1988 DILQLLKE-NKQMSSQLHECFQLLLEIRNV 2016


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
 Frame = +3

Query: 291  NMRLKLDAT--RNNENIAFRDDDKLDLLQKIAELNKQKSQLMHHVFMVSCENRNLWNKIS 464
            N+ L  DAT  +NNEN       +   L      +       + +++ S + R LW +  
Sbjct: 791  NLELMFDATAEKNNENSMNSAVFEKSQLYPFTIRHLGAYTASYTLYVESLQLRKLWVEKI 850

Query: 465  TIKNCNKPNKENVKNPL---VRTNTYIQSTPKTSVN 563
             +       K N+KNP    V ++   Q  P   VN
Sbjct: 851  NVAKKRHSQKINIKNPFALKVVSDVAFQYPPSDLVN 886


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 453 NKISTIKNCNKPNKENVKNPLVRTNTYIQ 539
           +K+++I N +KPN    +NP+  T+  I+
Sbjct: 179 SKVASISNTSKPNPIVSENPISATSVSIE 207


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 333 IAFRDDDKLDLLQKIAELNKQKSQLM 410
           I+F D  +LDL++ IA + K + +L+
Sbjct: 281 ISFHDTSRLDLVRNIASIPKSRWKLV 306


>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 426 VSCENRNLWNKISTIKNCNKPNKENVK 506
           + C N+   N +S +K C + N E+V+
Sbjct: 175 LKCVNQAFVNALSVLKTCREVNGESVR 201


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1213

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 615  LISEIFLPSLIQNTFLDNLHLF*VCFGCRYWYE 517
            L S  FL  +   + + NL L   CFG +YW E
Sbjct: 1020 LFSHSFLVIIFACSVILNLSLM-FCFGAKYWDE 1051


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 297 RLKLDATRNNENIAFRDDDKLDLLQKIAELNKQK 398
           RLK   T  +E    R +  +DLL+K  ELN +K
Sbjct: 429 RLKEVPTSTDEEFIIRQE-LMDLLEKCLELNPEK 461


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,464,791
Number of Sequences: 5004
Number of extensions: 50396
Number of successful extensions: 143
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)