Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b23
         (592 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0159 + 14954579-14954672,14954872-14955026                       30   1.6  
10_08_0842 - 20954712-20957738                                         29   3.7  
10_08_0171 + 15404117-15405598                                         29   3.7  
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662...    28   6.4  
03_02_0697 - 10487661-10488342,10490474-10490556                       27   8.5  

>03_03_0159 + 14954579-14954672,14954872-14955026
          Length = 82

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 538 WWLTGGPRAYCFVCIGWWFGIRAMLKG 458
           WW  G    Y  + + W +G+RAM KG
Sbjct: 5   WWGVGTGGGYAPMAVCWLWGVRAMSKG 31


>10_08_0842 - 20954712-20957738
          Length = 1008

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 279 NNNAGGKGSDSSNAVEPSSDQLAMESAERDAPSHAY 386
           N+N    GS  +N   P  D +   S + D PSH Y
Sbjct: 727 NSNLEDDGSAPTNVAVPMPDMVLPSSFDSDHPSHRY 762


>10_08_0171 + 15404117-15405598
          Length = 493

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 307 SDPLPPALLFSLDGWSLRVPLICSMSR 227
           S PLPP LL  LDG +L  PL+  + R
Sbjct: 8   SPPLPPHLLRHLDGRALSTPLLDPLIR 34


>03_02_0234 +
           6625417-6626184,6626314-6626339,6626435-6626531,
           6627009-6627116,6627194-6627328,6627429-6627528,
           6627763-6627974,6628060-6628125,6628231-6628464,
           6628583-6628641,6628716-6628782,6628863-6629192,
           6629267-6629335,6629417-6629503,6629605-6629692,
           6630057-6630178,6630251-6630355,6630442-6630485,
           6630558-6630627,6630711-6630814,6630980-6631189,
           6632935-6633018,6633291-6634003,6634115-6634649,
           6634703-6634789,6634826-6634970,6635049-6635125,
           6635215-6635359,6635462-6635626,6635725-6635958
          Length = 1761

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 282 NNAGGKGSDSSNAVEPSSDQLAMESAERDA 371
           N+AGG  ++   A EP ++Q+AME  E  A
Sbjct: 163 NDAGGALAEDVCADEPDAEQMAMEEEEEAA 192


>03_02_0697 - 10487661-10488342,10490474-10490556
          Length = 254

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 467 HSSNSKPPPDAHKAVCSWTS 526
           H+S+S PPP   K  C W S
Sbjct: 218 HASSSAPPPPPSKPKCLWQS 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,138,340
Number of Sequences: 37544
Number of extensions: 251382
Number of successful extensions: 828
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)