Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b23
         (592 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48031| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)             29   2.8  

>SB_48031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 273 NENNNAGGKGSDSSNAVEPSSDQLAMESAERDAPSHAYNG 392
           +++NNA    SDS+NA    SD     + +RD+ ++A NG
Sbjct: 202 SDSNNASNGDSDSNNASNGDSDSNNASNGDRDS-NNASNG 240



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 273 NENNNAGGKGSDSSNAVEPSSDQLAMESAERDAPSHAYNG 392
           ++NNNAG   SDS+N     SD     + + D+ ++  NG
Sbjct: 115 SDNNNAGNGDSDSNNTSNGDSDSNNTSNGDSDS-NNTSNG 153


>SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)
          Length = 521

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +3

Query: 258 SDQPSNENNNAGGKGSDSSNAVEPSSDQLAMESAERD 368
           SD  +++N+N+    +D+SN+   SSD  + +++  D
Sbjct: 70  SDNSNSDNSNSDNSNTDNSNSDNSSSDNSSSDNSNSD 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,846,294
Number of Sequences: 59808
Number of extensions: 267480
Number of successful extensions: 933
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)