Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b20
         (366 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024880-7|AAF60911.1|  124|Caenorhabditis elegans Hypothetical ...    60   5e-10
Z81064-3|CAB02961.2|  268|Caenorhabditis elegans Hypothetical pr...    27   3.1  

>AC024880-7|AAF60911.1|  124|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.7 protein.
          Length = 124

 Score = 60.1 bits (139), Expect = 5e-10
 Identities = 41/93 (44%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
 Frame = +2

Query: 89  MLKPKALTEVLSQANTGGVENTLLLNHQGALLAYSGYNDK--DARVTAAIASNVWSAYEK 262
           MLK KAL +VL Q NT GV+ + L N +G LLAY G   K   + V++A+ ++VW+A E+
Sbjct: 1   MLKQKALVDVLGQVNTSGVDGSWLFNKEGLLLAYVGSEQKAVASNVSSALIASVWAALER 60

Query: 263 HGRNVFKEDGLHLILVDCLNGKIAITQVAXLLL 361
              N  KE     ILV   NG I  T VA  +L
Sbjct: 61  RA-NDLKE----TILV-LENGVIGCTLVARTML 87


>Z81064-3|CAB02961.2|  268|Caenorhabditis elegans Hypothetical
          protein F16B12.4 protein.
          Length = 268

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -1

Query: 60 MKMAKYEVKLESFSSVDL 7
          MK  KYE+K ESFSS +L
Sbjct: 1  MKSVKYEIKEESFSSEEL 18


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,967,599
Number of Sequences: 27780
Number of extensions: 108115
Number of successful extensions: 230
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)