Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10b19
(706 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g16470.1 68414.m01970 20S proteasome alpha subunit B (PAB1) (... 330 5e-91
At1g79210.1 68414.m09235 20S proteasome alpha subunit B, putativ... 328 2e-90
At5g66140.1 68418.m08332 20S proteasome alpha subunit D2 (PAD2) ... 164 6e-41
At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1) (... 161 4e-40
At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1) 160 7e-40
At5g35590.1 68418.m04237 20S proteasome alpha subunit A1 (PAA1) ... 145 2e-35
At2g05840.1 68415.m00632 20S proteasome alpha subunit A2 (PAA2) ... 145 2e-35
At1g53850.1 68414.m06129 20S proteasome alpha subunit E1 (PAE1) ... 144 4e-35
At3g14290.1 68416.m01808 20S proteasome alpha subunit E2 (PAE2) ... 143 1e-34
At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1) ... 131 4e-31
At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2) ... 129 2e-30
At2g27020.1 68415.m03244 20S proteasome alpha subunit G (PAG1) (... 121 5e-28
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t... 48 8e-06
At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1) (P... 34 0.080
At2g27680.1 68415.m03354 aldo/keto reductase family protein cont... 31 0.74
At3g04820.1 68416.m00522 expressed protein contains PFam profile... 31 0.98
At5g26200.1 68418.m03118 mitochondrial substrate carrier family ... 29 2.3
At4g35560.1 68417.m05053 expressed protein 28 5.2
At1g64385.1 68414.m07297 expressed protein 28 5.2
At5g65165.1 68418.m08196 succinate dehydrogenase, iron-sulphur s... 28 6.9
At2g36800.1 68415.m04513 UDP-glucoronosyl/UDP-glucosyl transfera... 28 6.9
At4g24020.1 68417.m03452 RWP-RK domain-containing protein simila... 27 9.2
At4g02220.1 68417.m00300 zinc finger (MYND type) family protein ... 27 9.2
At3g04370.1 68416.m00462 hypothetical protein contains Pfam prof... 27 9.2
>At1g16470.1 68414.m01970 20S proteasome alpha subunit B (PAB1)
(PRC3) identical to proteasome subunit alpha type 2
SP:O23708, GI:6093778; identical to cDNA proteasome
subunit prc3 GI:2511573
Length = 235
Score = 330 bits (811), Expect = 5e-91
Identities = 157/232 (67%), Positives = 191/232 (82%), Gaps = 1/232 (0%)
Frame = +2
Query: 11 MASERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEH 190
M +YSFSLTTFSPSGKLVQIE+AL AV +G TS+GIKASNGVVIATE K SIL DE
Sbjct: 1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEA 60
Query: 191 SVNKVEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQE 370
SV K++ +T +IG+VYSGMGPD+R+LV ++RK A+QY +Y EPIP QLV+ ATVMQE
Sbjct: 61 SVQKIQHLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQE 120
Query: 371 YTQSGGVRPFGVSLLICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTE 550
+TQSGGVRPFGVSLL+ G+++ P L+Q DPSG+YF+WKA+AMGKN +N KTFLEKRYTE
Sbjct: 121 FTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTE 180
Query: 551 DLELDDAVHTAILTLKEGFEGQMTADNIEVGICDASG-FRRLXPAHVKDYLA 703
D+ELDDA+HTAILTLKEGFEG++++ NIE+G A FR L PA + DYLA
Sbjct: 181 DMELDDAIHTAILTLKEGFEGEISSKNIEIGKIGADKVFRVLTPAEIDDYLA 232
>At1g79210.1 68414.m09235 20S proteasome alpha subunit B, putative
nearly identical to SP|O23708 Proteasome subunit alpha
type 2 (EC 3.4.25.1) (20S proteasome alpha subunit B)
{Arabidopsis thaliana} and to At1g16470
Length = 235
Score = 328 bits (807), Expect = 2e-90
Identities = 157/232 (67%), Positives = 190/232 (81%), Gaps = 1/232 (0%)
Frame = +2
Query: 11 MASERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEH 190
M +YSFSLTTFSPSGKLVQIE+AL AV +G TS+GIKASNGVVIATE K SIL DE
Sbjct: 1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEA 60
Query: 191 SVNKVEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQE 370
SV K++ +T +IG VYSGMGPD+R+LV ++RK A+QY +Y EPIP QLV+ ATVMQE
Sbjct: 61 SVQKIQHLTPNIGTVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQE 120
Query: 371 YTQSGGVRPFGVSLLICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTE 550
+TQSGGVRPFGVSLL+ G+++ P L+Q DPSG+YF+WKA+AMGKN +N KTFLEKRYTE
Sbjct: 121 FTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTE 180
Query: 551 DLELDDAVHTAILTLKEGFEGQMTADNIEVG-ICDASGFRRLXPAHVKDYLA 703
D+ELDDA+HTAILTLKEGFEG++++ NIE+G I FR L PA + DYLA
Sbjct: 181 DMELDDAIHTAILTLKEGFEGEISSKNIEIGKIGTDKVFRVLTPAEIDDYLA 232
>At5g66140.1 68418.m08332 20S proteasome alpha subunit D2 (PAD2)
(PRS1) (PRC6) identical to SP|O24616 Proteasome subunit
alpha type 7-2 (EC 3.4.25.1) (20S proteasome alpha
subunit D2) {Arabidopsis thaliana}
Length = 250
Score = 164 bits (398), Expect = 6e-41
Identities = 90/231 (38%), Positives = 131/231 (56%), Gaps = 4/231 (1%)
Frame = +2
Query: 23 RYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNK 202
RY ++T FSP G L Q+EYAL AV G +VG++ ++ VV+A E K L D S K
Sbjct: 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKLQDSRSARK 62
Query: 203 VEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQS 382
+ + HI + +G+ D R+L+ +AR Q + L +P+ + + +A + Q+YTQS
Sbjct: 63 IVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQS 122
Query: 383 GGVRPFGVSLLICGWE--EGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDL 556
GGVRPFG+S LI G++ P L+Q DPSG + AWKA A G+N N+ + FLEK Y E
Sbjct: 123 GGVRPFGLSTLIVGFDPYSRLPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKES- 181
Query: 557 ELDDAVHTAILTLKEGFEGQMTADNIEVGIC--DASGFRRLXPAHVKDYLA 703
+ + AI L E E NIEV + + +G R+L A + +A
Sbjct: 182 SGQETIKLAIRALLEVVES--GGKNIEVAVMTREETGLRQLEEAEIDAIVA 230
>At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1)
(PRC9) identical to GB:AAC32057 from [Arabidopsis
thaliana] (Genetics (1998) 149 (2), 677-692); identical
to cDNA proteasome subunit prc9 GI:2511583
Length = 250
Score = 161 bits (391), Expect = 4e-40
Identities = 81/211 (38%), Positives = 122/211 (57%), Gaps = 3/211 (1%)
Frame = +2
Query: 17 SERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKS-ILYDEHS 193
S RY T FSP G+L Q+EYA+ A+ G+++GI + +GVV+ E K S +L S
Sbjct: 2 SRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLIGEKKVTSKLLQTSTS 61
Query: 194 VNKVEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEY 373
K+ I H+ +G+ D +L+ AR AQ+Y MY EP+P QLVQ + Q Y
Sbjct: 62 AEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFMYQEPMPVEQLVQSLCDTKQGY 121
Query: 374 TQSGGVRPFGVSLLICGWEEGRPY-LFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTE 550
TQ GG+RPFGVS L GW++ + L+ DPSG Y WKA A+G N ++ L++ Y +
Sbjct: 122 TQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYGGWKAAAVGANNQAAQSILKQDYKD 181
Query: 551 DLELDDAVHTAILTLKEGFEG-QMTADNIEV 640
D ++AV A+ L + + +T++ +E+
Sbjct: 182 DATREEAVELALKVLTKTMDSTSLTSEKLEL 212
>At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1)
Length = 250
Score = 160 bits (389), Expect = 7e-40
Identities = 86/210 (40%), Positives = 121/210 (57%), Gaps = 2/210 (0%)
Frame = +2
Query: 23 RYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNK 202
RY ++T FSP G L Q+EYAL AV G +VG++ ++ VV+A E K L D S K
Sbjct: 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKLQDSRSARK 62
Query: 203 VEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQS 382
+ + HI + +G+ D R+L+ +AR Q + L +P+ + + +A + Q+YTQS
Sbjct: 63 IVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQS 122
Query: 383 GGVRPFGVSLLICGWEEGR--PYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDL 556
GGVRPFG+S LI G++ P L+Q DPSG + AWKA A G+N N+ + FLEK Y E
Sbjct: 123 GGVRPFGLSTLIVGFDPYTRIPALYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKESA 182
Query: 557 ELDDAVHTAILTLKEGFEGQMTADNIEVGI 646
+ V AI L E E NIEV +
Sbjct: 183 G-QETVKLAIRALLEVVES--GGKNIEVAV 209
>At5g35590.1 68418.m04237 20S proteasome alpha subunit A1 (PAA1)
(PRC1) identical to proteasome subunit alpha type 6-1
SP:O81146 GI:12643647 from [Arabidopsis thaliana];
identical to cDNA proteasome subunit prc1 GI:2511587
Length = 246
Score = 145 bits (352), Expect = 2e-35
Identities = 85/231 (36%), Positives = 124/231 (53%), Gaps = 6/231 (2%)
Frame = +2
Query: 26 YSFSLTTFSPSGKLVQIEYALAAV-AAGGTSVGIKASNGVVIATENKHKSILYDEHSVNK 202
Y +T FSP G+L Q+EYA AV AG TS+G++ + V + T+ K L D+ SV
Sbjct: 9 YDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVTH 68
Query: 203 VEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQS 382
+ IT +IG+V +G+ D R LV QAR A ++ Y +P L + +A Q YTQ
Sbjct: 69 LFPITKYIGLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVYTQH 128
Query: 383 GGVRPFGVSLLICGW-EEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTED-- 553
+RP GV ++ G EE P L++CDP+G ++ KAT+ G FLEK+ E+
Sbjct: 129 AYMRPLGVVAMVMGVDEENGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPS 188
Query: 554 LELDDAVHTAILTLKEGFEGQMTADNIEVGICDASG--FRRLXPAHVKDYL 700
D+ V TAI L+ + A IEVG+ A FR L ++++L
Sbjct: 189 FTFDETVQTAISALQSVLQEDFKATEIEVGVVRAENPEFRALTTEEIEEHL 239
>At2g05840.1 68415.m00632 20S proteasome alpha subunit A2 (PAA2)
identical to GB:AF043519
Length = 246
Score = 145 bits (352), Expect = 2e-35
Identities = 84/231 (36%), Positives = 126/231 (54%), Gaps = 6/231 (2%)
Frame = +2
Query: 26 YSFSLTTFSPSGKLVQIEYALAAV-AAGGTSVGIKASNGVVIATENKHKSILYDEHSVNK 202
Y +T FSP G+L Q+EYA AV AAG TS+G++ + V + T+ K L D+ SV+
Sbjct: 9 YDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVSH 68
Query: 203 VEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQS 382
+ +T ++G++ +GM D R LV QAR A ++ Y +P L + +A Q YTQ
Sbjct: 69 LFPVTKYLGLLATGMTADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVYTQH 128
Query: 383 GGVRPFGVSLLICGWEEGR-PYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTED-- 553
+RP GV ++ G +E R P L++CDP+G ++ KAT+ G FLEK+ E+
Sbjct: 129 AYMRPLGVVAMVLGIDEERGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPA 188
Query: 554 LELDDAVHTAILTLKEGFEGQMTADNIEVGICDASG--FRRLXPAHVKDYL 700
D+ V TAI L+ + A IEVG+ A FR L + ++L
Sbjct: 189 FTYDETVQTAISALQSVLQEDFKATEIEVGVVRADDPLFRSLRTEEIDEHL 239
>At1g53850.1 68414.m06129 20S proteasome alpha subunit E1 (PAE1)
identical to 20S proteasome subunit PAE1 GI:3421087 from
[Arabidopsis thaliana]
Length = 237
Score = 144 bits (350), Expect = 4e-35
Identities = 81/236 (34%), Positives = 124/236 (52%), Gaps = 3/236 (1%)
Frame = +2
Query: 5 VIMASERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYD 184
+ + Y + TFSP G+L Q+EYA+ A+ G T++G+K GVV+A E + S L +
Sbjct: 1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLE 60
Query: 185 EHSVNKVEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPI---PTAQLVQRVA 355
SV K+ I HIG SG+ D R LV AR Q + Y EP+ T Q + +A
Sbjct: 61 PSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLA 120
Query: 356 TVMQEYTQSGGVRPFGVSLLICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLE 535
E + RPFGVSLLI G +E P L+ DPSG ++ A A+G + L+
Sbjct: 121 LRFGEGEEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ 180
Query: 536 KRYTEDLELDDAVHTAILTLKEGFEGQMTADNIEVGICDASGFRRLXPAHVKDYLA 703
+++ +DL L +A A+ LK+ E ++T +N+++ A + P V+ +A
Sbjct: 181 EQFNKDLSLQEAETIAVSILKQVMEEKVTPNNVDIAKV-APAYHLYTPQEVEAVIA 235
>At3g14290.1 68416.m01808 20S proteasome alpha subunit E2 (PAE2)
identical to 20S proteasome subunit PAE2 GB:AAC32061
from [Arabidopsis thaliana]
Length = 237
Score = 143 bits (346), Expect = 1e-34
Identities = 76/215 (35%), Positives = 117/215 (54%), Gaps = 3/215 (1%)
Frame = +2
Query: 5 VIMASERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYD 184
+ + Y + TFSP G+L Q+EYA+ A+ G T++G+K GVV+A E + S L +
Sbjct: 1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLE 60
Query: 185 EHSVNKVEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPI---PTAQLVQRVA 355
SV K+ I HIG SG+ D R LV AR Q + Y EP+ T Q + +A
Sbjct: 61 PSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLA 120
Query: 356 TVMQEYTQSGGVRPFGVSLLICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLE 535
E + RPFGVSLLI G +E P L+ DPSG ++ A A+G + L+
Sbjct: 121 LRFGEGEEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ 180
Query: 536 KRYTEDLELDDAVHTAILTLKEGFEGQMTADNIEV 640
+++ +D+ L +A A+ LK+ E ++T +N+++
Sbjct: 181 EQFNKDITLQEAETIAVSILKQVMEEKVTPNNVDI 215
>At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1)
(gb|AAC32062.1)
Length = 278
Score = 131 bits (317), Expect = 4e-31
Identities = 71/204 (34%), Positives = 114/204 (55%), Gaps = 2/204 (0%)
Frame = +2
Query: 11 MASERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEH 190
M +Y +TT+SP+G+L Q+EYA+ AV G ++G+++ + VV+A NK +S L H
Sbjct: 1 MFRNQYDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSEL-SSH 59
Query: 191 SVNKVEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQE 370
K+ + HIG+ +G+ D R+L R + + Y P+P +LV +A Q
Sbjct: 60 Q-RKIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQV 118
Query: 371 YTQSGGVRPFGVSLLICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTE 550
TQ RP+GV LL+ G +E +L+ PSG YF ++A A+G KT+LE+R+
Sbjct: 119 CTQRSWKRPYGVGLLVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFES 178
Query: 551 --DLELDDAVHTAILTLKEGFEGQ 616
D +D + AIL ++E +G+
Sbjct: 179 FGDSSREDLIKDAILAVRETLQGE 202
>At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2)
(PRC2B) (PRS1) identical to GB:AAC32063 from
[Arabidopsis thaliana] (Genetics 149 (2), 677-692
(1998)); identical to cDNA proteasome subunit prc2b
GI:2511585
Length = 277
Score = 129 bits (312), Expect = 2e-30
Identities = 73/230 (31%), Positives = 123/230 (53%), Gaps = 2/230 (0%)
Frame = +2
Query: 11 MASERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEH 190
M +Y +TT+SP+G+L Q+EYA+ AV G ++G+++ + VV+A NK +S L H
Sbjct: 1 MFRNQYDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSEL-SSH 59
Query: 191 SVNKVEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQE 370
K+ + HIG+ +G+ D R+L R + + Y P+P +LV +A Q
Sbjct: 60 Q-RKIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQV 118
Query: 371 YTQSGGVRPFGVSLLICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYT- 547
TQ RP+GV LL+ G +E +L+ PSG YF ++A A+G KT+LE+++
Sbjct: 119 CTQRSWKRPYGVGLLVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERKFES 178
Query: 548 -EDLELDDAVHTAILTLKEGFEGQMTADNIEVGICDASGFRRLXPAHVKD 694
++ +D + AI+ ++E +G + ++ +C S P H D
Sbjct: 179 FQESSKEDLIKDAIMAIRETLQG----ETLKSSLCTVSVLGVDEPFHFLD 224
>At2g27020.1 68415.m03244 20S proteasome alpha subunit G (PAG1)
(PRC8) identical to proteasome subunit alpha type 3
SP:O23715, GI:12644056 from [Arabidopsis thaliana];
identical to cDNA proteasome subunit prc8 GI:2511591
Length = 249
Score = 121 bits (291), Expect = 5e-28
Identities = 69/213 (32%), Positives = 112/213 (52%), Gaps = 2/213 (0%)
Frame = +2
Query: 26 YSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKV 205
Y S+TTFSP G++ QIEYA AV GT VGIK +G+V+ E S + S ++
Sbjct: 8 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVVGIKCKDGIVMGVEKLIASKMMLPGSNRRI 67
Query: 206 EMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSG 385
+ H GM +G+ D R +V +A+ A+ Y +Y + +P +L +RVA+ + T
Sbjct: 68 HSVHRHAGMAVAGLAADGRQIVARAKSEARSYESVYGDAVPVKELSERVASYVHLCTLYW 127
Query: 386 GVRPFGVSLLICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELD 565
+RPFG +++ G++ P L+ +PSG + + A+GK KT +EK ++
Sbjct: 128 WLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGKQAAKTEIEKLNLSEMTCK 187
Query: 566 DAV-HTAILTLKEGFEGQMTADNIEVG-ICDAS 658
+ V A + K E + A +E+ IC+ S
Sbjct: 188 EGVIEVAKIIYKLHDEAKDKAFELEMSWICEES 220
>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 428
Score = 47.6 bits (108), Expect = 8e-06
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Frame = +2
Query: 263 LLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGVSLLICGWEEGRP 442
+LV +A+ ++ E T++L+Q +++ + Y V + + GW+
Sbjct: 312 MLVLPLEFLAKDGVVLVGEKKVTSKLLQTSSSMEKMYKIDDHV-----ACAVAGWDRNHG 366
Query: 443 Y-LFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILTLKE 601
+ L+ DPSG Y W+A A+G N ++ L++ Y +D ++ V AI L +
Sbjct: 367 FQLYMSDPSGNYGGWQAAAVGANNQAAQSILKQDYKDDATREEVVQLAIKVLSK 420
>At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1)
(PRCD) identical to cDNA proteasome subunit prcd
GI:2511593
Length = 233
Score = 34.3 bits (75), Expect = 0.080
Identities = 23/114 (20%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Frame = +2
Query: 104 GGTSVGIKASNGVVIATENKHKSILY-DEHSVNKVEMITGHIGMVYSGMGPDYRLLVTQA 280
G T +G+ + GVV+ +++ + +Y + +K+ +T ++ + SG D +++
Sbjct: 12 GTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQVVSDYV 71
Query: 281 RKMAQQYFLMYHEPIP---TAQLVQRVATVMQEYTQSGGVRPFGVSLLICGWEE 433
R Q+ + + +P +A L++ +A + Q+G L++ GW++
Sbjct: 72 RYFLHQHTIQHGQPATVKVSANLIRMLAYNNKNMLQTG--------LIVGGWDK 117
>At2g27680.1 68415.m03354 aldo/keto reductase family protein
contains Pfam profile PF00248: oxidoreductase, aldo/keto
reductase family
Length = 384
Score = 31.1 bits (67), Expect = 0.74
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 68 VQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKVEMIT 217
V + Y L GG+ +G++ I N S++ DE VN ++ +T
Sbjct: 315 VAVRYVLDQQGVGGSMIGVRLGLAEHIQDANAIFSLVLDEEDVNSIQEVT 364
>At3g04820.1 68416.m00522 expressed protein contains PFam profile
PF01142: Uncharacterized protein family UPF0024;
expression supported by MPSS
Length = 747
Score = 30.7 bits (66), Expect = 0.98
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +2
Query: 578 TAILTLKEGFEGQMTADNIEVGI-CDAS---GFRRLXPAHVKDYLAN 706
T I T+ FEG T D +VGI C S GFR + D++ N
Sbjct: 25 TKIATIATNFEGMKTVDEADVGISCFISQLPGFRGILKQRYADFIVN 71
>At5g26200.1 68418.m03118 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 342
Score = 29.5 bits (63), Expect = 2.3
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
Frame = +2
Query: 23 RYSFSLTTFSPSGKLVQIEYALAAVAAGGTSV------GIKASNGVVIATENKHKSILYD 184
RY S +G V ++ AA A+G +++ IK V+ A EN + +
Sbjct: 233 RYKHSYNHKEDAGGSVVVQALSAATASGCSALVTMPVDTIKTRLQVLDAEENGRRRAMTV 292
Query: 185 EHSVNKVEMITGHIGMVYSGMGPDYRLLVTQARKMAQQY 301
SV + M G +G Y G+GP + + A M Y
Sbjct: 293 MQSVKSL-MKEGGVGACYRGLGPRWVSMSMSATTMITTY 330
>At4g35560.1 68417.m05053 expressed protein
Length = 917
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +2
Query: 56 SGKLVQIEYALAAVAAGGTSVGIKASNGVVI 148
S +++Q+EY + +A+ G+ V + SNG ++
Sbjct: 76 SNQVIQLEYTIPYLASNGSRVSVGYSNGDIL 106
>At1g64385.1 68414.m07297 expressed protein
Length = 351
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +1
Query: 238 LGNGSRLSSTGDSSKEDGPAVLLDVS*ADPDCAISATSSYGHAGVH 375
LG+GS++ + DSSK D + D S + + A+S SS G H
Sbjct: 71 LGDGSKMIGS-DSSKSDQGKIASDESDKEEEEAVSKNSSRKKQGFH 115
>At5g65165.1 68418.m08196 succinate dehydrogenase, iron-sulphur
subunit, mitochondrial (SDH2-3) nearly identical to
mitochondrial succinate dehydrogenase iron-sulphur
subunit (sdh2-3) [gi:12049602] from Arabidopsis thaliana
Length = 309
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -2
Query: 453 WNR*GRPSSQPQINRDTPKGRTPPDCVYSCMTVATRCTNC 334
W + +P + +R +PK R D +Y C+ A T+C
Sbjct: 183 WLKTRKPPKDGREHRQSPKDRKKLDGLYECILCACCTTSC 222
>At2g36800.1 68415.m04513 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 495
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 596 KEGFEGQMTADNIEVGICDASGFRRLXPAHVKDY 697
K+ F+G + A+ G+ + F+ L PA+ KDY
Sbjct: 207 KDIFDGMVEANETSYGVI-VNSFQELEPAYAKDY 239
>At4g24020.1 68417.m03452 RWP-RK domain-containing protein similar
to nodule inception protein [Lotus japonicus]
GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
Length = 959
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 527 FLEKRYTEDLELDDAVHTAILTLKEGFEGQMTADNIEVG 643
FL T+D E D + + ++T+KE F+ A ++ G
Sbjct: 470 FLPSSITDDQEQDLLLGSILVTMKEHFQSLRVASGVDFG 508
>At4g02220.1 68417.m00300 zinc finger (MYND type) family protein /
programmed cell death 2 C-terminal domain-containing
protein similar to SP|Q16342 Programmed cell death
protein 2 (Zinc finger protein Rp-8) {Homo sapiens};
contains Pfam profiles PF01753: MYND finger, PF04194:
Programmed cell death protein 2, C-terminal putative
domain
Length = 418
Score = 27.5 bits (58), Expect = 9.2
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = +1
Query: 58 GQISANRICFSCRSRRWYFRRHQSVKWR 141
G +++C C++ R+ +HQ++ WR
Sbjct: 192 GTWKGDKLCSGCKNARYCSPKHQALHWR 219
>At3g04370.1 68416.m00462 hypothetical protein contains Pfam profile
PF01657: Domain of unknown function
Length = 332
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 452 QCDPSGAYFAWKATAMGKNFNNGKTFL 532
QCDP A KAT N++N FL
Sbjct: 38 QCDPLDANILQKATTKSPNYSNQNLFL 64
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,480,401
Number of Sequences: 28952
Number of extensions: 364612
Number of successful extensions: 1107
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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