Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b18
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    33   0.023
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    28   1.1  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   1.5  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    27   2.0  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.6  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.6  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   6.1  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    25   8.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   8.0  
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    25   8.0  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 33.5 bits (73), Expect = 0.023
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
 Frame = +2

Query: 296  SSIHGVSAAFAAIYDCSSAAPSDLR--QPT--PVT--AYVHKSAAPAPDVRQSARAASAT 457
            + +HGV A  A+ Y     A + L   QPT  P+   AYV  + APA    QSA +A A 
Sbjct: 1716 NEVHGVGAEMASPYQPLQPASAHLPNLQPTLAPINQNAYVPSNIAPAMGAMQSAPSAEAV 1775

Query: 458  TGPA 469
              P+
Sbjct: 1776 AAPS 1779


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 20/75 (26%), Positives = 34/75 (45%)
 Frame = +2

Query: 173 HTSGLRDFAHSSAVLYNSPSTPSDDD*TANTPAVHNISSTFSSIHGVSAAFAAIYDCSSA 352
           HTS  R     S  + +S  + SD   + + P  ++ SST S+    ++   ++YD    
Sbjct: 80  HTSSSRSSHDESDSMSSSSESDSDSVSSESNPKSYSDSSTSSARSSSTSGSISLYDDYYP 139

Query: 353 APSDLRQPTPVTAYV 397
           A S     T ++ YV
Sbjct: 140 AYSSNAPNTAISNYV 154


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
 Frame = +2

Query: 221 NSPSTPSDDD*TANTPAVHNIS-------STFSSIHGVSAAFAAIYDCSSAAPSDLRQPT 379
           N+P+  +DD     TPA +  S       +T S  +  S+A ++    SSAA S L   +
Sbjct: 30  NTPTILADDIVHGYTPATYLSSVPTLLKRATTSYNYNTSSASSSSLTSSSAASSSLTSSS 89

Query: 380 PVTAYVHKSAAPAPDVRQSARAASATTGPAITSA 481
            + +    S   A     S  ++SAT+    +S+
Sbjct: 90  SLASSSTNSTTSASPTSSSLTSSSATSSSLASSS 123


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
 Frame = +2

Query: 164 SAVHTSGL----RDFAHSSAVLYNSPSTPSDDD*TANTPAVHNISSTFSSIH--GVSAAF 325
           S+VHTS      +  + SS+   +S S+ S    T+++ + H I+ST  S+H  G S + 
Sbjct: 520 SSVHTSSATSSSKSSSSSSSRSGSSSSSSSRSGSTSSSGSSHTITSTSQSVHTSGSSTST 579

Query: 326 AAIYDCSSAAPS 361
           +++   S+A  S
Sbjct: 580 SSVAVTSTAYSS 591


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
 Frame = +2

Query: 236 PSDDD*TANTPAVHNISS-TFSSIHGVSAAFAAIYDCSSAA--PSDLRQPTPVTAYVHKS 406
           P  +  TA T   H+ S  T ++   VS    A  +    A  PS   Q     +   KS
Sbjct: 445 PVQEAVTAPTETAHDFSKETTTASKRVSKHDKASAEKHKVARKPSSTGQEPTTPSTPAKS 504

Query: 407 AAPAPDVRQSARAASATTGPAITSA 481
           A  +   R+ ++ ASA + P  TSA
Sbjct: 505 AQSSKHARRPSKQASAPSSPGTTSA 529


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 26/106 (24%), Positives = 51/106 (48%)
 Frame = +2

Query: 161 TSAVHTSGLRDFAHSSAVLYNSPSTPSDDD*TANTPAVHNISSTFSSIHGVSAAFAAIYD 340
           +S+  +S       SS    + PST S    T+++ +  + SST SS    S++ ++I  
Sbjct: 219 SSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASS----SSSSSSIIS 274

Query: 341 CSSAAPSDLRQPTPVTAYVHKSAAPAPDVRQSARAASATTGPAITS 478
            SS++ S     T  T     S++ +P    S  ++S+++  + +S
Sbjct: 275 SSSSSSSS-PTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSS 319



 Score = 25.0 bits (52), Expect = 8.0
 Identities = 20/90 (22%), Positives = 40/90 (44%)
 Frame = +2

Query: 221 NSPSTPSDDD*TANTPAVHNISSTFSSIHGVSAAFAAIYDCSSAAPSDLRQPTPVTAYVH 400
           +SPS+ S    T+++ +  + SST SS    S++       SS+ P+     +  +   H
Sbjct: 348 SSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSS-SLSSH 406

Query: 401 KSAAPAPDVRQSARAASATTGPAITSADHN 490
           KS++ +        +A      +  S+ H+
Sbjct: 407 KSSSSSKSSSAPVSSAFYHNSTSSRSSSHS 436


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
 Frame = +2

Query: 158 DTSAVHTSGLRDFAHSSAVLYNSPSTPSDDD*TANTPAVHNISSTFSSIHGVSAAFAAIY 337
           DTS         F +S + L N  ++P   D T  + + HN +    +++ V +   +IY
Sbjct: 111 DTSVSGFGSQAVFENSVSPLSNPSNSPQAFDLTQGSSSTHNAND--FTVNNVGSRRQSIY 168

Query: 338 DCSSAAPS---DLRQPTPVTAYVHKS 406
           + +   PS   D  Q  PV+  +  S
Sbjct: 169 EFNIGIPSSNIDSSQFLPVSRAIAAS 194


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 218 YNSPSTPSDDD*TANTPAVHNISSTFSSIHGVSAAFAAIYDCSSAAPS 361
           Y SP+   +D  T  +   H+ SS+ +S+H        IYD SS  PS
Sbjct: 195 YFSPNLLGNDSKTRQSFPPHSSSSSHNSLHE-----PVIYDFSSENPS 237


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 350 AAPSDLRQPTPVTAYVHKSAAPAPDVRQSARAASA 454
           +APS  RQP P+++    S  PAP      R+A A
Sbjct: 368 SAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPA 402


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 344 SSAAPSDLRQPTPVTAYVHKSA 409
           +SAAPS+ RQP P + + ++ A
Sbjct: 204 ASAAPSNPRQPPPTSNFSNRKA 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,262,578
Number of Sequences: 5004
Number of extensions: 18864
Number of successful extensions: 87
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)