Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10b18
(578 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0854 + 25400855-25403741,25406174-25407708 35 0.041
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818... 31 0.50
02_04_0404 + 22626709-22628601 31 0.66
02_05_1081 + 33971950-33972606 30 1.5
09_06_0076 + 20710482-20710670,20711313-20711547,20711664-207116... 28 4.7
06_01_1179 + 10137652-10138038 28 6.2
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 28 6.2
04_04_0765 - 27910189-27912393,27912521-27912598 28 6.2
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 28 6.2
09_06_0038 - 20415363-20415883,20415917-20416596,20416858-204169... 27 8.2
09_04_0133 - 14938397-14938813,14939343-14939465,14939560-14939859 27 8.2
08_02_1570 + 27931057-27931367,27931486-27931550,27931763-279318... 27 8.2
05_07_0202 - 28378825-28379433,28382242-28382856 27 8.2
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 35.1 bits (77), Expect = 0.041
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +2
Query: 230 STPSDDD*TANTPA-VHNISSTFSSIHGVSAAFAAIYDCSSAAPSDLRQPTPVTAYVHKS 406
+TP+ +A PA + +SST ++ +AAFA + A P P P+ A
Sbjct: 1128 ATPAKALVSAPAPAPISTVSSTLAASASAAAAFAPAPVAAEAIPPP---PPPLPAAATAV 1184
Query: 407 AAPAPDVRQSARAAS 451
AAPAPD ++ + AS
Sbjct: 1185 AAPAPDRKRKLQTAS 1199
Score = 29.9 bits (64), Expect = 1.5
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Frame = +2
Query: 161 TSAVHTSGLRDFAHSSAVLYNSPSTPSDDD*TANTPAVHNISSTFSSIHGVSAAFAAIYD 340
TSAV T+G S+A + S P+ + +P SST + G SAA A+
Sbjct: 1238 TSAVVTAGA-PLPPSAAPVPVPASAPTMEPNATISPG----SSTLAP--GASAAAPAVAP 1290
Query: 341 CSSAAPSDLRQPTPVTAYVHKSAAPAPDVR--QSARAASATTGP 466
+A P + P P A +AAP P R Q+A S + GP
Sbjct: 1291 -PTAVPEAILVPMPPPAVAAAAAAPVPKKRKLQTASTLSKSGGP 1333
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 284 SSTFSSIHGVSAAFAAIYDCSSA-APSDLRQPTPVTAYVHKSAAPAPDVRQSARAASA 454
SS S + SA+ AA + + A A +++ P P+ A +AAPA + ++ AS+
Sbjct: 511 SSVISPVLAASASAAAAFAPAPAPAAAEVIPPPPLPAAASTAAAPAAERKRKLLTASS 568
>07_03_1783 +
29480987-29481165,29481526-29481685,29481767-29481862,
29481948-29482062,29482175-29482337,29482536-29482707,
29483924-29484013,29484137-29484598,29484675-29485268,
29485486-29485554,29485810-29485902,29486432-29486677,
29487277-29487417,29487748-29487828,29487911-29487973,
29488059-29488166,29488303-29488383,29488474-29488521,
29488979-29489053,29489973-29490068,29490156-29490236,
29490295-29490402,29490989-29491033,29491119-29491202,
29491379-29491482,29491581-29491728
Length = 1233
Score = 31.5 bits (68), Expect = 0.50
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Frame = +2
Query: 173 HTSGLRDFAHSSAVLYNSPSTPSDDD*TANTPAVHNISSTFSSIHGV-SAAFAAIYDCSS 349
HT +++ ++ ++PS+PS+ T N+ AV+ + S F+++ A ++ SS
Sbjct: 365 HTENVKNNVELTSA--DTPSSPSNSASTGNSEAVYQLVSMFAALAAQGDRAAGSLQILSS 422
Query: 350 AAPSDLRQPTPVTAYVHKSAA-PAPDVRQSARAASATTGPA 469
+ +DL + H + P D +QS A + P+
Sbjct: 423 SIAADLLAEVVMVNMQHLPVSHPEVDQQQSPSAGQPSGAPS 463
>02_04_0404 + 22626709-22628601
Length = 630
Score = 31.1 bits (67), Expect = 0.66
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +2
Query: 221 NSPSTPSDDD*TANTPAVHNISSTFSSIHGVSAAFAAIYDCSSAAPSDLRQPTPVTAYVH 400
+SPS+ SD D +++ + + SS+ SS S AA + A P++ V++
Sbjct: 412 SSPSSDSDSDSNSSSSSSSSSSSSSSSSDSDSDESAAAATHAPAIPTN----ACVSSAQP 467
Query: 401 KSAAP-APDVRQSAR 442
SAAP AP+V QSA+
Sbjct: 468 SSAAPAAPEVAQSAK 482
>02_05_1081 + 33971950-33972606
Length = 218
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 344 SSAAPSDLRQPTPVTAYVHKSAAPAPDVRQSARAASATTGPAITSA 481
+ AAP+D + P P + + A P +S A GPA +SA
Sbjct: 139 AQAAPTDQKAPRPARSKQQQHTAAVPTKIKSVADAPVYAGPAFSSA 184
>09_06_0076 +
20710482-20710670,20711313-20711547,20711664-20711689,
20712000-20712293,20712603-20712728,20712827-20712896,
20712992-20713182,20713394-20713519,20713878-20714279,
20714364-20714758,20714861-20715315,20715403-20715524,
20715653-20715693,20716026-20716129,20716363-20716576,
20717667-20717780,20718576-20718612
Length = 1046
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 246 SSEGVLGELYRTAEEWAKSRRP 181
SS GV + R AE+WA +RRP
Sbjct: 30 SSSGVSSDFRRHAEDWAITRRP 51
>06_01_1179 + 10137652-10138038
Length = 128
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +2
Query: 326 AAIYDCSSAAPSDLRQPTPVTAYVHKSAAPAPDVRQSARAASATTGPAITSA 481
AA ++ AP++ P P + + A AP V + R A P T A
Sbjct: 16 AAAISAAAQAPAESPSPKPSKSTAAATPAKAPTVASAPRKAGPAAAPTTTVA 67
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/82 (25%), Positives = 29/82 (35%)
Frame = +2
Query: 221 NSPSTPSDDD*TANTPAVHNISSTFSSIHGVSAAFAAIYDCSSAAPSDLRQPTPVTAYVH 400
NSPS P A +P ++T V AA APS P+P H
Sbjct: 88 NSPSPPKPPSQAAQSPLPPTTTTTTPPTAPVPAAAPP-----PTAPSPYSAPSPTPTPTH 142
Query: 401 KSAAPAPDVRQSARAASATTGP 466
P+P + + A+ P
Sbjct: 143 TQPRPSPPLLPTPATAADPANP 164
>04_04_0765 - 27910189-27912393,27912521-27912598
Length = 760
Score = 27.9 bits (59), Expect = 6.2
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Frame = +2
Query: 233 TPSDDD*TANTPAVHNISSTFSSIHGVSAAFAAIYDCSSAAPSDLRQPTPVTAYVHKSAA 412
+P+ D T +PA + + + G +A D AA + PT V A +A+
Sbjct: 382 SPAADVATTCSPAAAGMPAAAVAAAGSTAPAVVAPDSPVAAVAVFSSPTAVAASSSPAAS 441
Query: 413 PAPDVRQS---ARAASATTGPAITSADHN 490
P V S A A +A PA+ A ++
Sbjct: 442 PVDIVAASSSPAAAVAAFGSPAVVVASNS 470
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 344 SSAAPSDLRQPTPVTAYVHKSAAPAPDVRQSARAASATTGPAITSAD 484
+S + S R+P PV A + AP+P +A A S + A++ +D
Sbjct: 9 ASGSASSSRKPVPVAAAAARRPAPSP-AAAAAPAPSPSNPSAVSDSD 54
>09_06_0038 -
20415363-20415883,20415917-20416596,20416858-20416911,
20417440-20417489,20417665-20417800,20419030-20419128,
20419411-20419676
Length = 601
Score = 27.5 bits (58), Expect = 8.2
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +2
Query: 284 SSTFSSIHGVSAAFAAIYDCSSAAPSDLRQPTPVTAYVHKSAAPAPDVRQSARAASATTG 463
+S+ SS +AA +++ S++AP+ P+P A APAP S R + G
Sbjct: 42 ASSSSSASSSAAAGSSVAMVSASAPAASSSPSPSPA-----PAPAPSSPHSDRKVA---G 93
Query: 464 PAITSAD 484
PAI + D
Sbjct: 94 PAIQTED 100
>09_04_0133 - 14938397-14938813,14939343-14939465,14939560-14939859
Length = 279
Score = 27.5 bits (58), Expect = 8.2
Identities = 26/83 (31%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Frame = +2
Query: 197 AHSSAVLYNSPSTPSDDD*TANTPAVHNISSTFSSIHGVSAAFAAIYDCSSAAPSDLRQP 376
AH A+L S S P TA P+V + AA AA C S +P
Sbjct: 20 AHQRALLAPSLSPPPPSA-TARAPSVSTSCAAREDAAPAVAAAAASTACPSRQQPPTAEP 78
Query: 377 TPV--TAYVHKSAAPAPDVRQSA 439
P T V AA A D A
Sbjct: 79 RPKVRTVRVRADAADATDANSMA 101
>08_02_1570 +
27931057-27931367,27931486-27931550,27931763-27931841,
27931992-27932010,27932091-27932210,27932557-27932626,
27932709-27932752,27932918-27932959,27933033-27933092,
27933413-27933470,27934718-27935376
Length = 508
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +2
Query: 374 PTPVTAYVHKSAAPAPDVRQSARAASATTGPAITSA 481
P P AY+ S +PAP R SA G A T+A
Sbjct: 310 PNPQYAYMDSSPSPAPASRGRWSWGSALVGAASTAA 345
>05_07_0202 - 28378825-28379433,28382242-28382856
Length = 407
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +2
Query: 245 DD*TANTPAVHNISSTFSSIHGVSAAFAAIYDCSSAAPSDLRQPTPVTAYVHKS 406
D+ T+ T H++ ++ ++++ V A +C A+ S + P PVTA V S
Sbjct: 219 DEVTSITVVGHSLGASLATLNAVDIV-ANGANCPPASSSSSQPPCPVTAIVFAS 271
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,080,455
Number of Sequences: 37544
Number of extensions: 152326
Number of successful extensions: 687
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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