Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10b18
(578 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical pr... 34 0.063
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 31 0.59
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 29 1.8
AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical... 29 3.2
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 28 5.5
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 28 5.5
AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical ... 28 5.5
Z92804-4|CAB07251.1| 335|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical p... 27 7.3
U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription f... 27 7.3
U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein ( Caeno... 27 7.3
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical p... 27 9.6
Z50016-11|CAL22700.1| 157|Caenorhabditis elegans Hypothetical p... 27 9.6
Z50016-10|CAL22699.1| 264|Caenorhabditis elegans Hypothetical p... 27 9.6
Z50016-6|CAC42350.1| 448|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical pr... 27 9.6
U55363-2|AAA97961.3| 357|Caenorhabditis elegans Serpentine rece... 27 9.6
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 27 9.6
U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical pr... 27 9.6
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g... 27 9.6
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ... 27 9.6
AL023856-5|CAC15865.2| 343|Caenorhabditis elegans Hypothetical ... 27 9.6
AF151645-1|AAD42387.1| 264|Caenorhabditis elegans ionotropic GA... 27 9.6
AF151644-1|AAD42386.1| 448|Caenorhabditis elegans ionotropic GA... 27 9.6
>U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical
protein ZK84.1 protein.
Length = 801
Score = 34.3 bits (75), Expect = 0.063
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Frame = +2
Query: 236 PSDDD*TANTPAVHNISSTFSSIHGVSAAFAAIYDCSSAAPSDLRQPTPVTAYVHKSAAP 415
P+ ++ A PA +T + A A + + AP+ P P A V ++ AP
Sbjct: 577 PAAEETPAPAPAAEETPATAPAAEETPAPAPAADETPAPAPAAEETPAPAPA-VEETPAP 635
Query: 416 APDVRQS---ARAASATTGPAITSADH 487
AP V ++ A AA T PA +A++
Sbjct: 636 APAVEETPAPAPAAEETPAPAPAAAEY 662
Score = 31.9 bits (69), Expect = 0.34
Identities = 20/78 (25%), Positives = 31/78 (39%)
Frame = +2
Query: 236 PSDDD*TANTPAVHNISSTFSSIHGVSAAFAAIYDCSSAAPSDLRQPTPVTAYVHKSAAP 415
P+ D+ A PA + ++ A A+ + + AP+ P P A +A
Sbjct: 607 PAADETPAPAPAAEETPAPAPAVEETPAPAPAVEETPAPAPAAEETPAPAPAAAEYAAPV 666
Query: 416 APDVRQSARAASATTGPA 469
A + A AA T PA
Sbjct: 667 AEETPAPAPAAEETPAPA 684
Score = 28.7 bits (61), Expect = 3.2
Identities = 23/101 (22%), Positives = 42/101 (41%)
Frame = +2
Query: 164 SAVHTSGLRDFAHSSAVLYNSPSTPSDDD*TANTPAVHNISSTFSSIHGVSAAFAAIYDC 343
SA T+ L D + S ++ + +D T TPA + + G + + +
Sbjct: 339 SADTTAALVDTSSSEHAAESTEAPATDIAATETTPAPSVPAPVADAAAGYDSPSSIPEET 398
Query: 344 SSAAPSDLRQPTPVTAYVHKSAAPAPDVRQSARAASATTGP 466
+ A D P P +A ++ APAP ++ +A+ P
Sbjct: 399 PAPAAED--TPAPASAAAEETPAPAPAAEETPAPETASAAP 437
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = +2
Query: 314 SAAFAAIYDCSSAAPSDLRQPTPVTAYVHKSAAPAPDVRQSARAASATTGPA 469
+A AA YD S+ P + P P A A + A AA T PA
Sbjct: 535 AAEAAAGYDAPSSVPEETPAPAPAADETPAPAPAAEETPAPAPAAEETPAPA 586
Score = 28.3 bits (60), Expect = 4.2
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = +2
Query: 224 SPST-PSDDD*TANTPAVHNISSTFSSIHGVSAAFAAIYDCSSAAPSDLRQPTPVTAYVH 400
+P+T P+ ++ A PA + + A A+ + + AP+ P P A
Sbjct: 592 TPATAPAAEETPAPAPAADETPAPAPAAEETPAPAPAVEETPAPAPAVEETPAPAPA-AE 650
Query: 401 KSAAPAPDVRQ-SARAASATTGPA 469
++ APAP + +A A T PA
Sbjct: 651 ETPAPAPAAAEYAAPVAEETPAPA 674
Score = 28.3 bits (60), Expect = 4.2
Identities = 19/78 (24%), Positives = 30/78 (38%)
Frame = +2
Query: 236 PSDDD*TANTPAVHNISSTFSSIHGVSAAFAAIYDCSSAAPSDLRQPTPVTAYVHKSAAP 415
P+ ++ A PAV + ++ A A + + AP+ PV A
Sbjct: 617 PAAEETPAPAPAVEETPAPAPAVEETPAPAPAAEETPAPAPAAAEYAAPVAEETPAPAPA 676
Query: 416 APDVRQSARAASATTGPA 469
A + A+AA T PA
Sbjct: 677 AEETPAPAQAAEETPAPA 694
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 31.1 bits (67), Expect = 0.59
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +2
Query: 344 SSAAPSDLRQPTPVTAYVHKSAAPAPDVRQSARAASATTGP 466
SSAA L P P H PAP +RQ+A AA ++ P
Sbjct: 198 SSAAAEPLPPPAPTAQPAHHP--PAPPIRQAAHAAESSPPP 236
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 29.5 bits (63), Expect = 1.8
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 4/106 (3%)
Frame = +2
Query: 164 SAVHTSGLRDFAHSSAVLYNSPST----PSDDD*TANTPAVHNISSTFSSIHGVSAAFAA 331
S+V TS + +V NSP + PS + ++ + + ST +S G S A
Sbjct: 787 SSVSTSAAILTSTQQSVSTNSPGSTVTRPSTVSGSTSSGSTVTVGSTEASTSGSSVA--- 843
Query: 332 IYDCSSAAPSDLRQPTPVTAYVHKSAAPAPDVRQSARAASATTGPA 469
SS APS + P P T+ +P QS ++T P+
Sbjct: 844 ---SSSPAPSTSQNPNPSTSSGSSMITQSPYPSQSTSPVESSTTPS 886
Score = 27.9 bits (59), Expect = 5.5
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Frame = +2
Query: 206 SAVLYNSPSTPSDDD*TANTPAVHNIS--STFSSIHGVSAAF-AAIYDCSSAAP---SDL 367
S+ Y S STPS +A T + + S ST + + G S++ ++ S ++P S +
Sbjct: 453 SSSTYGS-STPSASSSSAGTASTISGSTGSTATIVPGSSSSVGSSTQSASPSSPGTMSTV 511
Query: 368 RQPT--PVTAYVHKSAAPAPDVRQSARAASATTGPAIT 475
PT VT S +PAP + ++ A+TG IT
Sbjct: 512 SGPTGSTVTVVPGSSTSPAPSSSPNPSSSPASTGSTIT 549
>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
protein Y75B8A.13 protein.
Length = 1420
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +2
Query: 338 DCSSAAPSDLRQ--PTPVTAYVHKSAAPAPDVRQSA 439
D SS AP RQ P P+ A+ S AP P Q +
Sbjct: 897 DSSSEAPGSPRQQDPEPIEAFTEASEAPPPPPNQGS 932
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 27.9 bits (59), Expect = 5.5
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Frame = +2
Query: 206 SAVLYNSPSTPSDDD*TANTPAVHNIS--STFSSIHGVSAAF-AAIYDCSSAAP---SDL 367
S+ Y S STPS +A T + + S ST + + G S++ ++ S ++P S +
Sbjct: 246 SSSTYGS-STPSASSSSAGTASTISGSTGSTATIVPGSSSSVGSSTQSASPSSPGTMSTV 304
Query: 368 RQPT--PVTAYVHKSAAPAPDVRQSARAASATTGPAIT 475
PT VT S +PAP + ++ A+TG IT
Sbjct: 305 SGPTGSTVTVVPGSSTSPAPSSSPNPSSSPASTGSTIT 342
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 27.9 bits (59), Expect = 5.5
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Frame = +2
Query: 206 SAVLYNSPSTPSDDD*TANTPAVHNIS--STFSSIHGVSAAF-AAIYDCSSAAP---SDL 367
S+ Y S STPS +A T + + S ST + + G S++ ++ S ++P S +
Sbjct: 453 SSSTYGS-STPSASSSSAGTASTISGSTGSTATIVPGSSSSVGSSTQSASPSSPGTMSTV 511
Query: 368 RQPT--PVTAYVHKSAAPAPDVRQSARAASATTGPAIT 475
PT VT S +PAP + ++ A+TG IT
Sbjct: 512 SGPTGSTVTVVPGSSTSPAPSSSPNPSSSPASTGSTIT 549
>AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical
protein K08D12.6 protein.
Length = 668
Score = 27.9 bits (59), Expect = 5.5
Identities = 21/58 (36%), Positives = 30/58 (51%)
Frame = +2
Query: 311 VSAAFAAIYDCSSAAPSDLRQPTPVTAYVHKSAAPAPDVRQSARAASATTGPAITSAD 484
V+ A AA + + AP + + P V A +AAPAPD +A AA+A A + D
Sbjct: 94 VTPAPAAAAEAPADAPVE-QAPVAVPAPA-PAAAPAPDCGSAAPAAAAPAAAAPAATD 149
Score = 27.9 bits (59), Expect = 5.5
Identities = 21/58 (36%), Positives = 30/58 (51%)
Frame = +2
Query: 311 VSAAFAAIYDCSSAAPSDLRQPTPVTAYVHKSAAPAPDVRQSARAASATTGPAITSAD 484
V+ A AA + + AP + + P V A +AAPAPD +A AA+A A + D
Sbjct: 422 VTPAPAAAAEAPADAPVE-QAPVAVPAPA-PAAAPAPDCGSAAPAAAAPAAAAPAATD 477
>Z92804-4|CAB07251.1| 335|Caenorhabditis elegans Hypothetical
protein K05D4.6 protein.
Length = 335
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 260 NTPAVHNISSTFSSIHGVSAAFAAIY 337
N+P +++++ F SIHG SA+ +Y
Sbjct: 271 NSPEMNSLAYMFMSIHGASASVIMLY 296
>Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 27.5 bits (58), Expect = 7.3
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +2
Query: 284 SSTFSSIHGVSAAFAAIYDCSSAAPSDLR--QPTPVTAYVHKSAAPAPDVRQSARAASAT 457
SS F H + A++ +SA SD++ T T+ S APAP T
Sbjct: 66 SSAFLPTHPPTETPASVAAPTSAT-SDIKPIHATSSTSTTAPSTAPAPTSTTDVLELKPT 124
Query: 458 TGPAITSAD 484
T PA SA+
Sbjct: 125 TAPATNSAE 133
>Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 27.5 bits (58), Expect = 7.3
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +2
Query: 284 SSTFSSIHGVSAAFAAIYDCSSAAPSDLR--QPTPVTAYVHKSAAPAPDVRQSARAASAT 457
SS F H + A++ +SA SD++ T T+ S APAP T
Sbjct: 66 SSAFLPTHPPTETPASVAAPTSAT-SDIKPIHATSSTSTTAPSTAPAPTSTTDVLELKPT 124
Query: 458 TGPAITSAD 484
T PA SA+
Sbjct: 125 TAPATNSAE 133
>U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription
factor E12/47 homolog protein.
Length = 399
Score = 27.5 bits (58), Expect = 7.3
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +2
Query: 284 SSTFSSIHGVSAAFAAIYDCSSAAPSDLR--QPTPVTAYVHKSAAPAPDVRQSARAASAT 457
SS F H + A++ +SA SD++ T T+ S APAP T
Sbjct: 66 SSAFLPTHPPTETPASVAAPTSAT-SDIKPIHATSSTSTTAPSTAPAPTSTTDVLELKPT 124
Query: 458 TGPAITSAD 484
T PA SA+
Sbjct: 125 TAPATNSAE 133
>U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein (
Caenorhabditis elegansN2 basic-helix-loop-helix
transcription factor E12/47homolog mRNA, complete cds.
).
Length = 399
Score = 27.5 bits (58), Expect = 7.3
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +2
Query: 284 SSTFSSIHGVSAAFAAIYDCSSAAPSDLR--QPTPVTAYVHKSAAPAPDVRQSARAASAT 457
SS F H + A++ +SA SD++ T T+ S APAP T
Sbjct: 66 SSAFLPTHPPTETPASVAAPTSAT-SDIKPIHATSSTSTTAPSTAPAPTSTTDVLELKPT 124
Query: 458 TGPAITSAD 484
T PA SA+
Sbjct: 125 TAPATNSAE 133
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 353 APSDLRQPTPVTAYVHKSAAPAPDVRQSARAASATTGPA 469
+PS + P P A + PAP R+ + +AS + PA
Sbjct: 322 SPSQSKSPAPKRAKSRSKSPPAPARRRRSPSASKSPPPA 360
>Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical
protein F47B8.13 protein.
Length = 245
Score = 27.1 bits (57), Expect = 9.6
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 335 YDCSSAAPSDLRQPTPVTAYVHKSAAPAP-DVRQSARAASATTGPAITSADHN 490
Y AAP+ +P P A AAPAP V + A A S PA A ++
Sbjct: 96 YAEGGAAPTAPAEPVPAPA-PEPEAAPAPAPVAEPALAPSPDAAPAADGASYS 147
>Z50016-11|CAL22700.1| 157|Caenorhabditis elegans Hypothetical
protein T21C12.1i protein.
Length = 157
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 398 HKSAAPAPDVRQSARAASATTGPAITS 478
HK A P PD+ R A T A TS
Sbjct: 66 HKPAPPTPDILHDVRLAECTCNAAPTS 92
>Z50016-10|CAL22699.1| 264|Caenorhabditis elegans Hypothetical
protein T21C12.1h protein.
Length = 264
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 398 HKSAAPAPDVRQSARAASATTGPAITS 478
HK A P PD+ R A T A TS
Sbjct: 173 HKPAPPTPDILHDVRLAECTCNAAPTS 199
>Z50016-6|CAC42350.1| 448|Caenorhabditis elegans Hypothetical
protein T21C12.1f protein.
Length = 448
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 398 HKSAAPAPDVRQSARAASATTGPAITS 478
HK A P PD+ R A T A TS
Sbjct: 357 HKPAPPTPDILHDVRLAECTCNAAPTS 383
>Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical protein
T21C12.1a protein.
Length = 1106
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 398 HKSAAPAPDVRQSARAASATTGPAITS 478
HK A P PD+ R A T A TS
Sbjct: 1015 HKPAPPTPDILHDVRLAECTCNAAPTS 1041
>U55363-2|AAA97961.3| 357|Caenorhabditis elegans Serpentine
receptor, class h protein28 protein.
Length = 357
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 260 NTPAVHNISSTFSSIHGVSAAFAAI 334
N P V IS TF+ +HG +A A I
Sbjct: 286 NNPLVVAISLTFAMVHGAAATLAMI 310
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 27.1 bits (57), Expect = 9.6
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = +2
Query: 227 PSTPSDDD*TANTPAVHNISSTFSSIHGVSAAFAAIYDCSSAAPSDLRQPT--PVTAYVH 400
P+TP+ T NTP + ++T +++ + S AP++L PT PV
Sbjct: 487 PTTPTPVPTTTNTPPANPTTATPTTVGTIGT--------SPTAPANLTTPTTAPVNP-TS 537
Query: 401 KSAAPAPDVRQSARAASATTGPAITS 478
+ AP V ++ + T P T+
Sbjct: 538 STTAPTAPVNPTSPTTAPTVPPVTTT 563
>U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical protein
ZK1193.2 protein.
Length = 1250
Score = 27.1 bits (57), Expect = 9.6
Identities = 19/66 (28%), Positives = 27/66 (40%)
Frame = +2
Query: 212 VLYNSPSTPSDDD*TANTPAVHNISSTFSSIHGVSAAFAAIYDCSSAAPSDLRQPTPVTA 391
+ ++S + SD+ A AV+ I + S H S YD S DL A
Sbjct: 1059 IAFDSSGSISDEMYYATVGAVNTIGNAISIGHDHSRILLGTYDAISHFSGDLNTLDTFEA 1118
Query: 392 YVHKSA 409
Y +K A
Sbjct: 1119 YQNKLA 1124
>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of glp-1
protein.
Length = 1492
Score = 27.1 bits (57), Expect = 9.6
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +2
Query: 317 AAFAAIYDCSSAAPSDLRQPTPVTAYVHKSAAPAPDVRQSARAASATTGPAITSADH 487
A F A + SS AP+ QP P +Y + PA V Q + + T P S+ H
Sbjct: 1215 AQFGAKPEASSHAPTPPPQPHP--SYQAPAPPPALSVFQHSPQGAPITAPPPASSHH 1269
>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
protein Y53H1C.2a protein.
Length = 1512
Score = 27.1 bits (57), Expect = 9.6
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +2
Query: 317 AAFAAIYDCSSAAPSDLRQPTPVTAYVHKSAAPAPDVRQSARAASATTGPAITSADH 487
A F A + SS AP+ QP P +Y + PA V Q + + T P S+ H
Sbjct: 1235 AQFGAKPEASSHAPTPPPQPHP--SYQAPAPPPALSVFQHSPQGAPITAPPPASSHH 1289
>AL023856-5|CAC15865.2| 343|Caenorhabditis elegans Hypothetical
protein Y94A7B.8 protein.
Length = 343
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 272 VHNISSTFSSIHGVSAAFAAIY 337
VHN+ + S+HGVSA IY
Sbjct: 276 VHNLITLLISLHGVSATILMIY 297
>AF151645-1|AAD42387.1| 264|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49Cshort protein.
Length = 264
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 398 HKSAAPAPDVRQSARAASATTGPAITS 478
HK A P PD+ R A T A TS
Sbjct: 173 HKPAPPTPDILHDVRLAECTCNAAPTS 199
>AF151644-1|AAD42386.1| 448|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49C protein.
Length = 448
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 398 HKSAAPAPDVRQSARAASATTGPAITS 478
HK A P PD+ R A T A TS
Sbjct: 357 HKPAPPTPDILHDVRLAECTCNAAPTS 383
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,234,134
Number of Sequences: 27780
Number of extensions: 114425
Number of successful extensions: 476
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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