Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10b18
(578 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 23 1.6
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 23 2.2
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 22 3.8
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 22 5.0
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 22 5.0
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 22 5.0
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 22 5.0
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 22 5.0
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 22 5.0
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 22 5.0
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 22 5.0
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 22 5.0
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 22 5.0
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 22 5.0
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 22 5.0
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 22 5.0
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 22 5.0
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 22 5.0
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 22 5.0
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 22 5.0
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 22 5.0
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 23.4 bits (48), Expect = 1.6
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 200 HSSAVLYNSPSTPSDDD*TANTPAVHNISSTFS-SIHGVSAAFAAIYDCSSAAPSDLRQ 373
HS N PS D+D + ++ +++ST S A A +++ ++ P ++ Q
Sbjct: 384 HSFPSTLNIPSVKIDEDQKCSIESITSVNSTSSPKPFPRRATLAQLHNFTTMTPQEIAQ 442
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 23.0 bits (47), Expect = 2.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 246 SSEGVLGELYRTAEEWAKSRRPE 178
SS+G+LGE E +KSR E
Sbjct: 376 SSQGILGEDVENNSEVSKSRTKE 398
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 22.2 bits (45), Expect = 3.8
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +1
Query: 373 THPRYRLC 396
THPR+RLC
Sbjct: 171 THPRHRLC 178
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.0
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +2
Query: 59 FILTIVRKRAVLCGVP 106
F+ TIV +LCG P
Sbjct: 437 FLTTIVSTTVILCGSP 452
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 21.8 bits (44), Expect = 5.0
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -1
Query: 245 HRRECWGSYTERRRSGQ 195
HRRE W ER R Q
Sbjct: 38 HRREAWLIQQEREREHQ 54
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 21.8 bits (44), Expect = 5.0
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -1
Query: 245 HRRECWGSYTERRRSGQ 195
HRRE W ER R Q
Sbjct: 38 HRREAWLIQQEREREHQ 54
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 21.8 bits (44), Expect = 5.0
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -1
Query: 245 HRRECWGSYTERRRSGQ 195
HRRE W ER R Q
Sbjct: 38 HRREAWLIQQEREREHQ 54
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 5.0
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -1
Query: 245 HRRECWGSYTERRRSGQ 195
HRRE W ER R Q
Sbjct: 38 HRREAWLIQQEREREHQ 54
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 5.0
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -1
Query: 245 HRRECWGSYTERRRSGQ 195
HRRE W ER R Q
Sbjct: 38 HRREAWLIQQEREREHQ 54
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 5.0
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -1
Query: 245 HRRECWGSYTERRRSGQ 195
HRRE W ER R Q
Sbjct: 38 HRREAWLIQQEREREHQ 54
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 5.0
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -1
Query: 245 HRRECWGSYTERRRSGQ 195
HRRE W ER R Q
Sbjct: 38 HRREAWLIQQEREREHQ 54
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.8 bits (44), Expect = 5.0
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -1
Query: 245 HRRECWGSYTERRRSGQ 195
HRRE W ER R Q
Sbjct: 38 HRREAWLIQQEREREHQ 54
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 21.8 bits (44), Expect = 5.0
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -1
Query: 245 HRRECWGSYTERRRSGQ 195
HRRE W ER R Q
Sbjct: 38 HRREAWLIQQEREREHQ 54
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.8 bits (44), Expect = 5.0
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -1
Query: 245 HRRECWGSYTERRRSGQ 195
HRRE W ER R Q
Sbjct: 38 HRREAWLIQQEREREHQ 54
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.8 bits (44), Expect = 5.0
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -1
Query: 245 HRRECWGSYTERRRSGQ 195
HRRE W ER R Q
Sbjct: 38 HRREAWLIQQEREREHQ 54
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.8 bits (44), Expect = 5.0
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -1
Query: 245 HRRECWGSYTERRRSGQ 195
HRRE W ER R Q
Sbjct: 38 HRREAWLIQQEREREHQ 54
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 21.8 bits (44), Expect = 5.0
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -1
Query: 245 HRRECWGSYTERRRSGQ 195
HRRE W ER R Q
Sbjct: 38 HRREAWLIQQEREREHQ 54
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 21.8 bits (44), Expect = 5.0
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -1
Query: 245 HRRECWGSYTERRRSGQ 195
HRRE W ER R Q
Sbjct: 38 HRREAWLIQQEREREHQ 54
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 21.8 bits (44), Expect = 5.0
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -1
Query: 245 HRRECWGSYTERRRSGQ 195
HRRE W ER R Q
Sbjct: 38 HRREAWLIQQEREREHQ 54
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 21.8 bits (44), Expect = 5.0
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -1
Query: 245 HRRECWGSYTERRRSGQ 195
HRRE W ER R Q
Sbjct: 38 HRREAWLIQQEREREHQ 54
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 21.8 bits (44), Expect = 5.0
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -1
Query: 245 HRRECWGSYTERRRSGQ 195
HRRE W ER R Q
Sbjct: 38 HRREAWLIQQEREREHQ 54
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,107
Number of Sequences: 438
Number of extensions: 1561
Number of successful extensions: 21
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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