Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b16
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe...    29   0.50 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.0  
SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces...    27   2.6  
SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   3.5  
SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces pomb...    26   4.6  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   4.6  
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    25   6.1  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   8.1  
SPAC12B10.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.1  

>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 29.1 bits (62), Expect = 0.50
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
 Frame = +1

Query: 124 NIVRENYLQAVRMR-RTIEEKRVNTSVDRDLESVQSQATNQNTQVHAQSTNEEVILEVYL 300
           N++ +  ++  R++ + + EK++   V+++LESV+   T Q +   +   +   I E+  
Sbjct: 21  NLLEQYEVEIARLKSQLVLEKKLRIQVEKELESVK---TKQISSSASSKVSSNTIQELDS 77

Query: 301 ETDMNRNLGDDQVHVHAPKGIVPGQTHN 384
            TD +   G D V    P    P    N
Sbjct: 78  TTDEDEIPGSDTVDEEDPSLNAPFSEKN 105


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +1

Query: 172  IEEKRVNTSVDRDLESVQSQATNQNTQVHAQSTNEEVILEVYLETDMNRNLGDD 333
            ++EK  + S D DLE +  +A ++N +  A +  +E + +     + N  L +D
Sbjct: 4092 LDEKEGDVSKDSDLEDMDMEAADENKE-EADAEKDEPMQDFEDPLEENNTLDED 4144


>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 298

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = -1

Query: 234 GLTLNALEISIYACVYSFFFDRTTHPNCLKIVFSHDIYFSRGAFSLSCN*AIGYPIRYLT 55
           G  L  +++ +    Y   F     PNC  ++ + D  F      L  + AI YP+ + T
Sbjct: 152 GAVLCGMDMHVTYLKYCMAFQYLQDPNCAFLLTNQDSTFPTNGKFLPGSGAISYPLIFST 211


>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = +1

Query: 133 RENYLQAVRMRRTIEEKRVNTSVDRDLESVQSQATNQNTQVHAQSTNEEVILEVYLETDM 312
           R N +  +  + TIE  +  T V ++ +++   A NQN Q+      ++      +E+ +
Sbjct: 54  RSNKISPITSQLTIEPNKSQTIVKKNPDNLIFVAVNQNVQLQLSILKQQQNRVAAMESAL 113

Query: 313 NR 318
            R
Sbjct: 114 QR 115


>SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 316

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 358 GIVPGQTHNVDP 393
           GI+PG THNV P
Sbjct: 281 GIIPGATHNVGP 292


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 405 YFYIWIYIVSLTWNYPFWSVN 343
           YFY +  +V +T  YP W+ N
Sbjct: 10  YFYFFPLLVFITLQYPRWTFN 30


>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -1

Query: 420 IFLISYFYIWIYIVSLTWNYP 358
           ++LIS+F+  IY+VSL + +P
Sbjct: 3   VYLISFFFTAIYVVSL-YTFP 22


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = -1

Query: 480  VFFVSL*ILC---QMNLIDSWSVIFLISYFYIWIYIVS 376
            +F +++ IL    ++NLI   + +F I  F+IW +I S
Sbjct: 1225 IFVINIFILMNQERLNLISLITWMFSIGVFWIWTFIYS 1262


>SPAC12B10.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 361 IVPGQTHNVDPNIKVRNQKDHAPGVDQ 441
           +V  + ++ DP +K   +KD  P VD+
Sbjct: 180 VVSARVYSTDPMLKAFERKDFTPVVDE 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,803,061
Number of Sequences: 5004
Number of extensions: 32220
Number of successful extensions: 114
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)