Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b16
         (582 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0234 - 32535281-32535919,32536121-32536860,32536911-32536953     32   0.29 
12_01_0296 + 2240376-2240580,2241556-2241764,2241847-2241975,224...    31   0.51 

>03_06_0234 - 32535281-32535919,32536121-32536860,32536911-32536953
          Length = 473

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = +1

Query: 280 VILEVYLETDMNRNLGDDQVH-VHAPKGIVP---GQTHNVDPNIKVRNQKDHAPGVDQV 444
           +++   ++ D    LGD+  + +  P+ +VP   G+  N DP+ +V   KD  PG D+V
Sbjct: 101 ILVLAIVKDDPAEELGDENANPLPGPEKVVPDPNGELPNKDPDEEVVTPKDTVPGPDEV 159


>12_01_0296 +
           2240376-2240580,2241556-2241764,2241847-2241975,
           2242271-2242417,2243045-2243108,2243208-2243311,
           2243373-2243411
          Length = 298

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 18/54 (33%), Positives = 31/54 (57%)
 Frame = +1

Query: 151 AVRMRRTIEEKRVNTSVDRDLESVQSQATNQNTQVHAQSTNEEVILEVYLETDM 312
           A ++RR  E+  + TSVD +L  V++  TN      +   N+  IL++Y ET++
Sbjct: 61  AGKLRRRREDWSLFTSVDENLNHVRT--TNHIETCKSTGPNDAAILDLYKETEL 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,691,955
Number of Sequences: 37544
Number of extensions: 174941
Number of successful extensions: 500
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)