Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b16
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   3.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 253 VHAQSTNEEVILEVYLETDMNR 318
           VH++  N   ++  Y +TD+N+
Sbjct: 90  VHSRDVNVRAVVAQYYDTDVNK 111


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 160 MRRTI-EEKRVNTSVDRDLESVQSQATNQNTQVHAQS 267
           MRR + E+KR++ SV+ D      Q  + +   H Q+
Sbjct: 788 MRRLMSEDKRLSKSVNGDQSQPPHQQLHHHQSTHPQA 824


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 481 ILKTLKQKWKRPSKLQ 528
           ILK LKQK+ + SKL+
Sbjct: 343 ILKFLKQKYVKNSKLE 358


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = -1

Query: 441 LIDSWSVIFLISYFYIWIYIVSLTWNYPFWS 349
           L D       ++  +IW Y++ L +   F+S
Sbjct: 211 LTDDEDTKVFVTCIFIWAYVIPLIFIILFYS 241


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = -1

Query: 441 LIDSWSVIFLISYFYIWIYIVSLTWNYPFWS 349
           L D       ++  +IW Y++ L +   F+S
Sbjct: 211 LTDDEDTKVFVTCIFIWAYVIPLIFIILFYS 241


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,240
Number of Sequences: 438
Number of extensions: 2391
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)