Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b15
         (623 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   1.6  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    23   2.7  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   4.8  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 485 RLHRE*PPSYL--ASRTRGKTKKTRAEPRSRPNSL 583
           +LH +  P +   A+ TRGK +K + +P    NS+
Sbjct: 537 QLHMQLYPDWSSRANATRGKKRKRKQDPADGGNSM 571


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 485 RLHRE*PPSYL--ASRTRGKTKKTRAEPRSRPNSL 583
           +LH +  P +   A+ TRGK +K + +P    NS+
Sbjct: 429 QLHMQLYPDWSSRANATRGKKRKRKQDPADGGNSM 463


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 507 GGHSRCRRYFTSVNHNQELH 448
           G  + C RY+  VN  QEL+
Sbjct: 37  GDETYCDRYWECVNGQQELY 56


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +1

Query: 325 LGKVVT-KKFSNMETCVEIGESVR 393
           L KVV  KK  N  TC +IG S R
Sbjct: 146 LRKVVPLKKLCNNGTCEDIGNSHR 169


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,464
Number of Sequences: 336
Number of extensions: 2632
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)