Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b15
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha...   186   2e-48
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo...   142   5e-35
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar...   122   3e-29
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   3.8  
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    25   6.7  

>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score =  186 bits (453), Expect = 2e-48
 Identities = 84/123 (68%), Positives = 106/123 (86%)
 Frame = +1

Query: 253 NIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSGSGE 432
           +IK+F+G+SHP+LA+K+  R+G+ LGKV   ++SN ET V IGESVR EDV+I+Q+G G 
Sbjct: 5   SIKIFAGNSHPELAEKVARRIGLSLGKVAVVQYSNRETSVTIGESVRDEDVFILQTGCGS 64

Query: 433 INDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPITAKLVANILSVSGAD 612
           IND+LMELLIMINAC+ ASA R+TA+IPCFPYARQDKKDKSRAPITA+LVAN+L  +G +
Sbjct: 65  INDHLMELLIMINACRSASARRITAIIPCFPYARQDKKDKSRAPITARLVANMLQTAGCN 124

Query: 613 HII 621
           HII
Sbjct: 125 HII 127


>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
           Prs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score =  142 bits (343), Expect = 5e-35
 Identities = 70/125 (56%), Positives = 92/125 (73%)
 Frame = +1

Query: 247 MPNIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSGS 426
           M +  +  G SHP+L   I +RLGI    V  K+F+N ET VEI ESVR +DV+I+QSGS
Sbjct: 1   MKSATIIGGGSHPELLHLISNRLGITPCDVSLKRFANGETSVEIRESVRDKDVFILQSGS 60

Query: 427 GEINDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPITAKLVANILSVSG 606
             +ND+LMELLI+I+ACK  SA R+TAV+P FPY++Q K  K R  ITA++VAN+L+V+G
Sbjct: 61  STVNDSLMELLIIISACKGGSAKRITAVMPYFPYSKQSKMRKYRDAITARMVANLLTVAG 120

Query: 607 ADHII 621
            DHII
Sbjct: 121 VDHII 125


>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 341

 Score =  122 bits (295), Expect = 3e-29
 Identities = 63/110 (57%), Positives = 80/110 (72%), Gaps = 2/110 (1%)
 Frame = +1

Query: 247 MPNIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSGS 426
           M N+ VF   SHP L + I + L +D+G+V   KFSN ET V I +SVRG DVYIV   S
Sbjct: 1   MKNLVVFGTESHPKLTESICEHLCLDIGRVELSKFSNGETSVRIKQSVRGCDVYIVSPAS 60

Query: 427 GEINDNLMELLIMINACKIASASRVTAVIPCFPYARQ-DKK-DKSRAPIT 570
           G++ND+LMELLIMI+ACK ASA +VTAV+P FPY+RQ D+K   S AP++
Sbjct: 61  GQVNDHLMELLIMISACKTASAKKVTAVLPVFPYSRQPDQKFSFSGAPLS 110


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 260 LMFGILVVKGRT*SNLFTTSSRVI 189
           L+FGIL + G   + L+TT +R+I
Sbjct: 319 LIFGILCIAGFVVNELYTTRTRII 342


>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 196 LEDVVNKLDHVLPLTTRMPNIKVFSGSSHPDLAQKIVDRL 315
           ++D+VN L  V+     +P I+   GS+   +AQK+  RL
Sbjct: 189 VQDIVNGLFSVIVTLGTIPIIRCPQGSAAEMVAQKLNQRL 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,338,242
Number of Sequences: 5004
Number of extensions: 42672
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)