Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b15
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    24   1.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.8  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   9.8  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +1

Query: 208 VNKLDHVLPLTTR-MPNIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNM 360
           V+     +PL  R +PN   F  S H      +   L   +GK+V +KFS +
Sbjct: 218 VHSSSFCIPLPVRVLPN---FPSSGHWQDQMSLPQMLADKIGKMVNQKFSEL 266


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 229 LPLTTRMPNIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETC 369
           LPL  R        G S   LA+K+ DR+ + +  V+T + +    C
Sbjct: 612 LPLNIRWSYPGEEMGGSSGVLAKKVADRVSMLMISVITARHAGEYVC 658


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 17  AIREGHRCRIHGATRPHALP 76
           A+  G  CRIHG+    A P
Sbjct: 435 AVNLGSACRIHGSPATTAAP 454


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 114 IIHLCFIASHSATCY 158
           II   F   H+ATCY
Sbjct: 305 IISSVFTTRHNATCY 319


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 114 IIHLCFIASHSATCY 158
           II   F   H+ATCY
Sbjct: 11  IISSVFTTRHNATCY 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,909
Number of Sequences: 438
Number of extensions: 3049
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)