Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b10
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    30   0.28 
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    28   1.5  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    28   1.5  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    28   1.5  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    27   2.0  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    27   3.5  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    26   4.6  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    26   6.1  

>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +1

Query: 361 NINLVYKMKDSLADFNDNKTKPTPIAKVAPELKQNADTDMGI 486
           N+NL Y  K  +   ND   KP  IA +A   + N  T   I
Sbjct: 523 NVNLQYSPKTPICKINDETLKPPTIANIAGHKQMNHLTSENI 564


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
 Frame = -3

Query: 440 FAIGVGFVLLSLKSAKLSFILYTRLIFISTE-------IQILPI*ISRLLSQNGIFIIFT 282
           F + +GF+LL +    L+ ++  + +            ++ LP+ +  +L+ N +   F 
Sbjct: 430 FPMIIGFLLLIIGGFNLALLMQDKSVIFRMSANMAPSVMKCLPVCLILILANNELHSPFP 489

Query: 281 AKFYNILMNYY*CLIHF 231
           A+FY +L ++Y  L  F
Sbjct: 490 AEFYVLLPSFYILLNSF 506


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +1

Query: 502  VLGCDDCKNMDSIMFFRFPEDSSLRQIWTDLTGRNNWTPTDFS 630
            ++  D  K    + FFR    +SLR+ W     R  WT   F+
Sbjct: 967  IVNLDTIKGYSVLSFFRENHKNSLRKSWEAFKRRAFWTSLGFA 1009


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -1

Query: 487 LYPCPYQHFVLIQ-ELPSLLAL 425
           L+PCP  HFVL++  +PS+ +L
Sbjct: 95  LHPCPKPHFVLVRSSIPSVASL 116


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 560 SGNLKNIIESIFLQSSHPSTAQVFVIPMSVSAFCFNSGATF 438
           SG L+N+   I  Q S+P      V+     +F F +G TF
Sbjct: 567 SGKLRNMKSRIQAQYSNPELETYLVLSKEKESFIFLAGETF 607


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -3

Query: 611 QLFLPVRSVHICLRLESSGNLKNIIESIFLQSSHPSTAQVFVIPMSVSAF 462
           QLF  VR    C+RL S   L  + ++  L  +     Q+ V P+ +  F
Sbjct: 291 QLFCLVRQFDPCIRLLSISCLVTLYKAGILSKNQTKEIQMIVTPILIRLF 340


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 556 PEDSSLRQIWTDLTGRNNWTPTDFSYICIPHFSVDCFKLDNEDXMVLVDKA 708
           P    + QI+  LTGR   TP +F      H +V C    NE  +  +DK+
Sbjct: 324 PAFEVVSQIFRGLTGRKVTTPAEF-LSHEGHAAVKCSYKANEGQLYCLDKS 373


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +1

Query: 355 DMNINLVYKMKDSLADFNDNKTKPTPIAKVAPELKQNADTDMGITKTCA 501
           +MN+ +  K KDS    ++N+  PTP  + +P +K  + T    +++ A
Sbjct: 440 EMNV-IKDKNKDSTVRASNNENIPTPDKQASPFVKNLSSTSSPFSQSSA 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,728
Number of Sequences: 5004
Number of extensions: 52622
Number of successful extensions: 129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)