Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b09
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    25   6.6  
SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.6  

>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 116  LPSESDITT*NECIRTI*VIFTKL 45
            LP+ESDI+  NE  RT+  + T L
Sbjct: 1695 LPAESDISKTNETTRTLQSLTTSL 1718


>SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 237

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -2

Query: 160 LIQHCLPRTHSPNSYYLPNPTLLLKTNAFEPFR 62
           LI   LP+   P+   + N T  LKTN FEP R
Sbjct: 185 LITLPLPQKQ-PDFLRMNNDTNELKTNGFEPIR 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,321,721
Number of Sequences: 5004
Number of extensions: 22971
Number of successful extensions: 62
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)