Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b09
         (428 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0062 + 27423081-27423287,27423372-27423449,27423548-274235...    27   4.9  
04_01_0183 + 2079879-2080084,2080994-2081122,2081204-2081426,208...    27   8.5  

>05_07_0062 +
           27423081-27423287,27423372-27423449,27423548-27423597,
           27423714-27423767,27423965-27424017,27424101-27424173,
           27424718-27424767,27424919-27424987,27425183-27425291,
           27425658-27425725,27425982-27426082,27426260-27426412,
           27426503-27426570,27426898-27426943,27427027-27427107
          Length = 419

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 288 RPRS*AGWSPRGATASRTRPGP*SRDRTRSCRPIRC 181
           R ++  GW+P      R RP   +  R  S RP+RC
Sbjct: 8   RKQTQPGWAPTTRGGGRRRPLALALGRLSSRRPVRC 43


>04_01_0183 +
           2079879-2080084,2080994-2081122,2081204-2081426,
           2081569-2081824,2082358-2082550,2082602-2082815,
           2082912-2083025,2083284-2084000
          Length = 683

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +2

Query: 215 LDQGPGRVLEAVAPLGLHPAHDLGLALEVVQ*VQMQVKIEMMKPKKHLAMKKWRMNKSPK 394
           +D+G  R ++ +   G+ P    GL  +     QM+V I+ + P+    + KW + KS K
Sbjct: 245 IDEGTKRNIKEMVDNGMTPTAMYGLLSDNCH--QMEVAIKAVWPETTHRVCKWHILKSAK 302


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,590,408
Number of Sequences: 37544
Number of extensions: 158238
Number of successful extensions: 331
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)