Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b08
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     25   0.78 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   9.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.6  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 265 FPSPFAASYPHEETVNK 315
           FP  F  SYP EE +N+
Sbjct: 312 FPIKFVPSYPFEEDINE 328


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 227 YQPQQLHRNTKLHFRAPS 280
           +QP  +H+ T + FR P+
Sbjct: 273 FQPVHVHKQTAIAFRTPT 290


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 227 YQPQQLHRNTKLHFRAPS 280
           +QP  +H+ T + FR P+
Sbjct: 273 FQPVHVHKQTAIAFRTPT 290


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 581 AVSSLTPASFKMLID 537
           A SS TP  FK++ID
Sbjct: 327 ANSSSTPEQFKVIID 341


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 592 SQSWQYLH*HQPP 554
           +QS Q+LH  QPP
Sbjct: 358 TQSLQHLHYRQPP 370


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.127    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,546
Number of Sequences: 438
Number of extensions: 4241
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)