Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b07
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62010.1 68416.m06964 expressed protein                             29   3.8  
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein...    29   3.8  
At4g28430.1 68417.m04069 reticulon family protein contains Pfam ...    27   8.8  
At3g04810.1 68416.m00520 protein kinase, putative similar to LST...    27   8.8  
At1g14780.1 68414.m01767 expressed protein                             27   8.8  

>At3g62010.1 68416.m06964 expressed protein
          Length = 1254

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -1

Query: 423  ARAKARVLAYWEDRPGQELKSPAEIMFA 340
            A  ++RV+ YWE+   + +K+PAE+  A
Sbjct: 1018 ASNQSRVIGYWENIQPENVKTPAEVYAA 1045


>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 119

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 422 REQKRESWRTGKTGQARSSNLPPK*CLRRDKIGLSSRQCH 303
           R+  RE  R       R ++  P+ C +  K+G  +R CH
Sbjct: 11  RDNDRERTRASYNNDRRRNDYDPRACYKCGKLGHFARSCH 50


>At4g28430.1 68417.m04069 reticulon family protein contains Pfam
           profile PF02453: Reticulon
          Length = 457

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 341 RRDKIGLSSRQCHSRVPCVRWPNDVRNRPEDFPQ 240
           ++ K+G S ++ HS VP +  P+   ++P+D  Q
Sbjct: 152 KQKKLGRSKKEKHSSVPLLASPSPSSDQPQDVCQ 185


>At3g04810.1 68416.m00520 protein kinase, putative similar to
           LSTK-1-like kinase [Lycopersicon esculentum]
           GI:15637110; contains Pfam profile: PF00069 Eukaryotic
           protein kinase domain
          Length = 606

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/55 (30%), Positives = 20/55 (36%)
 Frame = -2

Query: 332 KIGLSSRQCHSRVPCVRWPNDVRNRPEDFPQFSTLCRGRQHSPAPQRSGNTAETS 168
           KI L      S V   +WP     R   FP+      G+ HS  P R     E S
Sbjct: 264 KIHLKVNDPGSNVLPAQWPESESARRNSFPEQRRRPAGKSHSFGPSRFRGNLEDS 318


>At1g14780.1 68414.m01767 expressed protein
          Length = 627

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -2

Query: 278 PNDVRNRPEDFPQFSTLCRGRQHSP 204
           P    N+   F   S LCRG QHSP
Sbjct: 568 PVPANNKIVKFVDLSQLCRGPQHSP 592


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,039,792
Number of Sequences: 28952
Number of extensions: 253450
Number of successful extensions: 600
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)