Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b05
         (707 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57330| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   4e-12
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)                  69   4e-12
SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)            30   2.1  
SB_55446| Best HMM Match : Sec7 (HMM E-Value=8.1)                      28   8.5  

>SB_57330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 55

 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 28/53 (52%), Positives = 42/53 (79%)
 Frame = +3

Query: 117 LLNHQGALLAYSGYNDKDARVTAAIASNVWSAYEKHGRNVFKEDGLHLILVDC 275
           LLN++G++L+YSG  DK+A  TAAIAS++WSAYEK+GR  F  + + ++ +DC
Sbjct: 2   LLNNEGSILSYSGNGDKEANKTAAIASSIWSAYEKNGRIAFHNEEIKMLFMDC 54


>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
          Length = 690

 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 28/53 (52%), Positives = 42/53 (79%)
 Frame = +3

Query: 117 LLNHQGALLAYSGYNDKDARVTAAIASNVWSAYEKHGRNVFKEDGLHLILVDC 275
           LLN++G++L+YSG  DK+A  TAAIAS++WSAYEK+GR  F  + + ++ +DC
Sbjct: 2   LLNNEGSILSYSGNGDKEANKTAAIASSIWSAYEKNGRIAFHNEEIKMLFMDC 54


>SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)
          Length = 291

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = +3

Query: 72  EVLSQANTGGVENTLLLNHQGALLAYSGYNDKDARVTAAIASNVWSAYEKHGRNVFKEDG 251
           EVLS A+T  +E +  L H+       GY   D+ V + I    W         + K D 
Sbjct: 67  EVLSDADTATIEKSSFLPHRTTRFIVHGYAGLDS-VDSIIDLKGWWGIRMKDELLRKSDD 125

Query: 252 LHLILVDCLNG-KIA-ITQVANLLL 320
            ++I+VD + G KI  +  VAN  L
Sbjct: 126 -NVIIVDWIRGAKIPYVRAVANTRL 149


>SB_55446| Best HMM Match : Sec7 (HMM E-Value=8.1)
          Length = 344

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 96  GGVENTLLLNHQGALLAYSGYNDKDAR 176
           G  E+ LL +HQ  + A  GY D D++
Sbjct: 144 GRAEDRLLFDHQSRVAALLGYEDSDSK 170


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,214,007
Number of Sequences: 59808
Number of extensions: 314242
Number of successful extensions: 628
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)