Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b05
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.70 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   5.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.6  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = +3

Query: 39  AFKMLKPKALTEVLSQANTGGVENTLLLNH---QGALLAYSGYNDKDARVTAAIASNVWS 209
           + +  KP  LTE L   +   +E  ++L H   + ++ A     D   + T  ++++  +
Sbjct: 630 SMESFKPPTLTESLLNRHNEDMEKLMMLKHREFRSSIKASDKLKDSRIKTTEKLSTDPNT 689

Query: 210 AYEKHGRNVFKEDGLH 257
            ++ +  +  K  G H
Sbjct: 690 HFQVNQSHGIKRSGSH 705


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 162 DKDARVTAAIASNVWSAYEKHGRNVFKEDGLHLI 263
           +K++R++AAI S      +    N++ E GL+++
Sbjct: 329 NKESRISAAIDSGYILNNDGKWHNIYSEKGLNIL 362


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 162 DKDARVTAAIASNVWSAYEKHGRNVFKEDGLHLI 263
           +K++R++AAI S      +    N++ E GL+++
Sbjct: 329 NKESRISAAIDSGYILNNDGKWHNIYSEKGLNIL 362


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 312 LLLCLYANEAVGFGILKEKIN 374
           L LCL   +A+ FG++ E  N
Sbjct: 181 LALCLAVPQAIQFGVVYENKN 201


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 495 FSNQVKYFSDFSYYFAHNYLKLH 427
           F NQ+++ SD    FA+ +  +H
Sbjct: 467 FENQLQFVSDAVMAFAYAFRDMH 489


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,919
Number of Sequences: 438
Number of extensions: 3180
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)