Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b05
         (707 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01830.1 68414.m00102 armadillo/beta-catenin repeat family pr...    30   1.7  
At4g38640.1 68417.m05469 choline transporter-related contains we...    29   4.0  
At1g48310.1 68414.m05396 SNF2 domain-containing protein / helica...    28   7.0  
At1g21780.1 68414.m02726 BTB/POZ domain-containing protein Conta...    27   9.2  

>At1g01830.1 68414.m00102 armadillo/beta-catenin repeat family
           protein armadillo/beta-catenin-like repeats,
           Pfam:PF00514
          Length = 574

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
 Frame = +3

Query: 162 DKDARVTAAIASNVWSAYEKHGRNVFKEDGLHLILVDCLNGKIAITQVANLLLCLY---- 329
           D  ++  +A A    SA  +  R +  E+G+  + +D LN  I +    ++  CL     
Sbjct: 305 DSVSQAASAAALKNMSAVSEL-RQLLAEEGIIRVSIDLLNHGILLGSREHMAECLQNLTA 363

Query: 330 ANEAVGFGILKE-KINAIAQYLEGPLKQ 410
           A++A+   I+ E  + ++  YL+GPL Q
Sbjct: 364 ASDALREAIVSEGGVPSLLAYLDGPLPQ 391


>At4g38640.1 68417.m05469 choline transporter-related contains weak
           similarity to CD92 protein [Homo sapiens]
           gi|16945323|emb|CAC82175
          Length = 556

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 22/91 (24%), Positives = 41/91 (45%)
 Frame = +3

Query: 60  KALTEVLSQANTGGVENTLLLNHQGALLAYSGYNDKDARVTAAIASNVWSAYEKHGRNVF 239
           +A+ +   + NT G+ N +L     ALL    Y +K     AAI    +    K    + 
Sbjct: 379 RAIVDNAREENTQGIVNMVLRCCANALLGALDYLNKFTINFAAITGEAYCTSAKMTYELL 438

Query: 240 KEDGLHLILVDCLNGKIAITQVANLLLCLYA 332
           + + L  + V+ ++ +I +T +  +L   YA
Sbjct: 439 RRNLLSAVFVETVSTRI-LTGIVFVLSAAYA 468


>At1g48310.1 68414.m05396 SNF2 domain-containing protein / helicase
           domain-containing protein contains similarity to
           DNA-dependent ATPase A GI:6651385 from [Bos taurus]};
           contains PFam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2
          Length = 673

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +3

Query: 51  LKPKALTEVLSQANTGGVENTLLLNHQGALLAYSGYNDKDARVTAAIASNVWSAYEK 221
           L PK  T+  S+     V   +LL+  G L A   YN         I   +W+A E+
Sbjct: 55  LAPKPNTDAGSKPQEQKVSVKILLHSSGVLAAKFPYNQVVVDAVRKIPKAIWNAKER 111


>At1g21780.1 68414.m02726 BTB/POZ domain-containing protein Contains
           similarity to gb|AJ000644 SPOP (speckle-type POZ
           protein) from Homo sapiens and contains a PF|00651
           BTB/POZ domain. ESTs gb|T75841, gb|R89974, gb|R30221,
           gb|N96386, gb|T76457, gb|AI100013 and gb|T76456 come
           from this gene;supported by full-length
          Length = 326

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +2

Query: 266 SRLFKWENCNHTSCQFITVSLCE*GCWFWHSERKNQCYCSV 388
           SRL +W   N   C F      + G W WH   +   Y SV
Sbjct: 10  SRLAQWRIENFGPCSFKKSDPFKVGIWNWHLSIERNRYLSV 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,763,318
Number of Sequences: 28952
Number of extensions: 222615
Number of successful extensions: 471
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)