Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b04
         (627 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C su...    44   1e-04
At3g56450.1 68416.m06278 alpha-soluble NSF attachment protein 1 ...    29   1.9  
At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR...    28   5.8  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    28   5.8  
At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative / th...    28   5.8  
At5g16780.1 68418.m01965 SART-1 family protein contains Pfam dom...    27   7.7  
At1g68110.1 68414.m07780 epsin N-terminal homology (ENTH) domain...    27   7.7  
At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containi...    27   7.7  

>At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C
           subunit family protein similar to ATPase subunit 9
           [Arabidopsis thaliana] GI:15215920; contains Pfam
           profile PF00137: ATP synthase subunit C
          Length = 85

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 21/30 (70%), Positives = 23/30 (76%)
 Frame = +3

Query: 324 FGSLIIGYARNPSLKQQLFSYAILGFALSE 413
           F SLI   ARNPSL +Q F YAILGFAL+E
Sbjct: 39  FSSLIHSVARNPSLAKQSFGYAILGFALTE 68


>At3g56450.1 68416.m06278 alpha-soluble NSF attachment protein 1 /
           alpha-SNAP1 (ASNAP1) identical to alpha-soluble NSF
           attachment protein 1 (Alpha-SNAP1) (N-
           ethylmaleimide-sensitive factor attachment protein,
           alpha 1) (Swiss-Prot:Q9LXZ5) [Arabidopsis thaliana]
          Length = 381

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
 Frame = -2

Query: 605 CNTHQSLHHYEG-EVSKHSIPWLSTP-DSIH*NLICRMAVVVFLKVNSLESE-EQQERHH 435
           C  H+   +YE  E+ + +I +  T  +      +   A    LKV    S+ EQQ R  
Sbjct: 167 CMDHEIAEYYESDEMFEQAIAYYETAAEFFQIEEVTTSANQCNLKVAQYASQLEQQSRFM 226

Query: 434 KTEQTHSLRQGETQNGV*EQLLLEG 360
           KT+  HSL     + GV   LL  G
Sbjct: 227 KTQARHSLNNKLLKYGVKGHLLTAG 251


>At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1095

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +1

Query: 58  LIKTKCCLPPD*SPLQPGLPSSATLH--WCDHLQQYPPI 168
           L++  CC   +  P    LPS   LH  +C  LQ +P I
Sbjct: 682 LLEMSCCKKLEIIPTNINLPSLEVLHFRYCTRLQTFPEI 720


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -3

Query: 262  NLAAESMSLVTDVVWKDRTAESCVGTAGTICVWVGTAASGRTS 134
            N+A+E + L+ ++         CV     +C+ VG ++SG+TS
Sbjct: 2028 NIASEQLKLLPEIRQNLEAVAHCVQNKW-LCILVGPSSSGKTS 2069


>At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative /
           threonine--tRNA ligase, putative similar to SP|O04630
           Threonyl-tRNA synthetase, mitochondrial precursor (EC
           6.1.1.3) (Threonine--tRNA ligase) (ThrRS) {Arabidopsis
           thaliana}; contains Pfam profiles PF00587: tRNA
           synthetase class II core domain (G, H, P, S and T),
           PF03129: Anticodon binding domain, PF02824: TGS domain
          Length = 458

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +1

Query: 217 SRPHRSLRTLTLLPNSLVLVQRQWE*LVPELVLEQSSAPSSSAM 348
           SRPH  ++ +TLLP+ +    R+WE    ++ ++ S   + SA+
Sbjct: 37  SRPHDPIK-ITLLPDGIEKEGRRWETSPMDIAVQISKGLAKSAL 79


>At5g16780.1 68418.m01965 SART-1 family protein contains Pfam
           domain, PF03343: SART-1 family
          Length = 820

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 350 GIADDEGAEDCSNTSSGTSYSHCRCTSTNEFG 255
           GI DD+G ++  +  S   +   R   T+EFG
Sbjct: 660 GIVDDDGGKESKDKESKDRFKDIRIERTDEFG 691


>At1g68110.1 68414.m07780 epsin N-terminal homology (ENTH)
           domain-containing protein / clathrin assembly
           protein-related similar to clathrin assembly protein
           AP180 (GI:6492344) [Xenopus laevis]; contains Pfam
           profile: PF01417 ENTH domain, suggesting involvement in
           endocytosis or cytoskeletal machinery
          Length = 379

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 10  KAGLLLLGVLCCRAPHLIKTKCCLPPD*SPLQPG 111
           K+ +LL GVLCC+ P ++     LP D S    G
Sbjct: 90  KSLMLLHGVLCCKVPSVVGEFRRLPFDLSDFSDG 123


>At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 656

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -2

Query: 602 NTHQSLHHYEGEVSKHSIPWLSTPDSIH*NLICRMAVVVFLKVNSLESEE 453
           N   + H++E    KH++ W S   +   N   + AV +F+++N +E E+
Sbjct: 358 NVELARHYFEKTPEKHTVSWNSIIAAYEKNKDYKEAVDLFIRMN-IEGEK 406


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,021,656
Number of Sequences: 28952
Number of extensions: 298519
Number of successful extensions: 957
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)