Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b03
         (714 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   3.3  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    22   5.7  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   9.9  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   9.9  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    21   9.9  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 633  EHTVATDDGYHLTVLRIPPHAPK 701
            E+    D   H  ++  PPHAP+
Sbjct: 1379 ENDYGQDSVTHQLIVNAPPHAPQ 1401


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/38 (18%), Positives = 22/38 (57%)
 Frame = +3

Query: 297 DETKQVHDKMNVKHHSPVYSVIMKLKKEVDINHGDSVV 410
           +ETK++ + +  + H P   V++ + +   ++ G++ +
Sbjct: 148 EETKRLVEDLEAESHKPYIDVVVPITQFTLLSIGETAM 185


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 502 HVFRESPKISSISCS 458
           H  RESP I   SCS
Sbjct: 6   HFDRESPNIDHNSCS 20


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 607 SRNINTP*KNTRSPPTTA 660
           + N+N+P    ++PP TA
Sbjct: 421 TNNVNSPASMNQTPPPTA 438


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/38 (18%), Positives = 22/38 (57%)
 Frame = +3

Query: 297 DETKQVHDKMNVKHHSPVYSVIMKLKKEVDINHGDSVV 410
           +ETK++ + +  + H P   V++ + +   ++ G++ +
Sbjct: 148 EETKRLVEDLEAECHKPYIDVVVPITQFTLLSIGETAM 185


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,344
Number of Sequences: 336
Number of extensions: 2748
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)