Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b02
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93387-4|CAI91177.1|  333|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z93387-3|CAB07652.1|  352|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily ass...    28   6.7  
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    28   6.7  
U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily ass...    28   6.7  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    28   6.7  
U53335-2|AAU87823.1|  190|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z93387-4|CAI91177.1|  333|Caenorhabditis elegans Hypothetical
           protein T02E9.2b protein.
          Length = 333

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 105 RRRPSHRAHATPATCWGGRVARGYPG 28
           ++ P+   H  PA C GG + +GY G
Sbjct: 30  QQAPACAPHPAPAPCSGGNIVQGYVG 55


>Z93387-3|CAB07652.1|  352|Caenorhabditis elegans Hypothetical
           protein T02E9.2a protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 105 RRRPSHRAHATPATCWGGRVARGYPG 28
           ++ P+   H  PA C GG + +GY G
Sbjct: 30  QQAPACAPHPAPAPCSGGNIVQGYVG 55


>U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 308, isoform d protein.
          Length = 1379

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 21/59 (35%), Positives = 25/59 (42%)
 Frame = -3

Query: 189 YARLSGRESSRRVTSVARPVQRPSDVAGRRRPSHRAHATPATCWGGRVARGYPGTVPLR 13
           Y RLS  E+S  V S   P+  P  V GR+           +C   R  R  PG  PLR
Sbjct: 234 YKRLSMWETSLNVESDVEPLHTPPLVVGRKLDYIDKEGNNPSCCRERGTR-KPGFRPLR 291


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 21/59 (35%), Positives = 25/59 (42%)
 Frame = -3

Query: 189 YARLSGRESSRRVTSVARPVQRPSDVAGRRRPSHRAHATPATCWGGRVARGYPGTVPLR 13
           Y RLS  E+S  V S   P+  P  V GR+           +C   R  R  PG  PLR
Sbjct: 234 YKRLSMWETSLNVESDVEPLHTPPLVVGRKLDYIDKEGNNPSCCRERGTR-KPGFRPLR 291


>U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 308, isoform a protein.
          Length = 1633

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 21/59 (35%), Positives = 25/59 (42%)
 Frame = -3

Query: 189 YARLSGRESSRRVTSVARPVQRPSDVAGRRRPSHRAHATPATCWGGRVARGYPGTVPLR 13
           Y RLS  E+S  V S   P+  P  V GR+           +C   R  R  PG  PLR
Sbjct: 234 YKRLSMWETSLNVESDVEPLHTPPLVVGRKLDYIDKEGNNPSCCRERGTR-KPGFRPLR 291


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 21/59 (35%), Positives = 25/59 (42%)
 Frame = -3

Query: 189 YARLSGRESSRRVTSVARPVQRPSDVAGRRRPSHRAHATPATCWGGRVARGYPGTVPLR 13
           Y RLS  E+S  V S   P+  P  V GR+           +C   R  R  PG  PLR
Sbjct: 234 YKRLSMWETSLNVESDVEPLHTPPLVVGRKLDYIDKEGNNPSCCRERGTR-KPGFRPLR 291


>U53335-2|AAU87823.1|  190|Caenorhabditis elegans Hypothetical
          protein C55C3.7 protein.
          Length = 190

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 1  GTRAAQRDCARVPACNATAPT 63
          GT    RDC   P CN T P+
Sbjct: 7  GTLFQTRDCISAPVCNCTGPS 27


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,742,925
Number of Sequences: 27780
Number of extensions: 256893
Number of successful extensions: 583
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)