Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10b01
(663 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0971 + 8169197-8169311,8170351-8170458,8170533-8170725,817... 229 1e-60
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248... 225 2e-59
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 219 2e-57
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 216 1e-56
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227... 110 8e-25
03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026 71 8e-13
06_03_1514 + 30696632-30696724,30696857-30697009,30697226-306973... 29 3.3
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 28 5.8
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689... 28 5.8
06_03_1275 + 28903961-28904123,28904225-28904322,28904406-289045... 28 5.8
11_01_0481 - 3702399-3703062,3703254-3703813 28 7.6
05_01_0421 + 3308692-3309070,3309199-3309339,3309776-3309897,331... 28 7.6
01_04_0010 - 15058175-15058195,15058320-15058430,15059031-150592... 28 7.6
>07_01_0971 +
8169197-8169311,8170351-8170458,8170533-8170725,
8170811-8171069,8171151-8171207,8171433-8171480,
8171571-8171657,8171743-8171800,8171891-8171958,
8172066-8172161,8172244-8172291,8172658-8172696,
8172782-8172868,8173136-8173147
Length = 424
Score = 229 bits (561), Expect = 1e-60
Identities = 106/188 (56%), Positives = 137/188 (72%), Gaps = 2/188 (1%)
Frame = +1
Query: 106 DVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDARFYAL 279
+VFF+EKF +D WES WV SE E G++ T+GK+ DPED KG++TSED RFYA+
Sbjct: 30 EVFFQEKF-EDGWESRWVKSEWKKDENMAGEWNHTSGKWNGDPED-KGIQTSEDYRFYAI 87
Query: 280 SRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDIC 459
S ++ FSN+ K LV+QF+VKHEQ +DCGGGY+K+ ++QK G+TPY IMFGPDIC
Sbjct: 88 SAEYPEFSNKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGDTPYSIMFGPDIC 147
Query: 460 GPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLE 639
G TKKVH IF+ KNHLIKKD+ C+ D +H+YTLI+ PD TY +LIDN + +SG +
Sbjct: 148 GYSTKKVHTIFTKNDKNHLIKKDVPCETDQLSHVYTLIIHPDATYTILIDNVEKQSGSIY 207
Query: 640 ADWDFLPP 663
WD LPP
Sbjct: 208 EHWDILPP 215
>01_06_1654 -
38924090-38924101,38924183-38924215,38924737-38924829,
38924909-38924965,38925048-38925143,38925237-38925304,
38925429-38925486,38925572-38925658,38925935-38925982,
38926060-38926116,38926200-38926458,38926666-38926858,
38926991-38927098,38927849-38927957
Length = 425
Score = 225 bits (550), Expect = 2e-59
Identities = 99/188 (52%), Positives = 138/188 (73%), Gaps = 2/188 (1%)
Frame = +1
Query: 106 DVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDARFYAL 279
+V FEE+F +D WES WV S+ E G FK TAG++ DP DDKG++T+ DAR +A+
Sbjct: 28 EVIFEERF-EDGWESRWVKSDWKRSEGKAGTFKHTAGRYSGDP-DDKGIQTTLDARHFAI 85
Query: 280 SRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDIC 459
S K FSN+G+ LV+Q+++K EQDI+CGGGY+K+ + QK G+TPY +MFGPDIC
Sbjct: 86 SAKIPEFSNKGRTLVLQYSIKFEQDIECGGGYIKLMSGYVNQKKFSGDTPYSLMFGPDIC 145
Query: 460 GPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLE 639
G TKK+H+I SY+G+N+ IKKD++C+ D TH+YT I++PD +Y +L+DN + ESG +
Sbjct: 146 GTQTKKLHLILSYQGQNYPIKKDLQCETDKLTHVYTFILRPDASYSILVDNRERESGSMY 205
Query: 640 ADWDFLPP 663
DWD LPP
Sbjct: 206 TDWDILPP 213
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 219 bits (535), Expect = 2e-57
Identities = 102/198 (51%), Positives = 135/198 (68%), Gaps = 12/198 (6%)
Frame = +1
Query: 106 DVFFEEKFPDDSWESNWVYSE--HPGKEFGKFKLTAGKFFSDPEDD----------KGLK 249
+VFF+EKF DD WE WV SE G++ T+GK++ D +D G++
Sbjct: 26 EVFFQEKF-DDGWEDRWVKSEWKKDDNRAGEWNHTSGKWYGDADDKGMCEVTLLLCAGIQ 84
Query: 250 TSEDARFYALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETP 429
TSED RFYA+S K+ FS++ K LV+QF+VKHEQ +DCGGGY+K+ ++QK GETP
Sbjct: 85 TSEDYRFYAISAKYPEFSSKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGETP 144
Query: 430 YEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLID 609
Y IMFGPDICG TKKVH I + GKNHLIKKD+ CK D TH+YTLI++PD Y +LID
Sbjct: 145 YSIMFGPDICGYATKKVHAILTKNGKNHLIKKDVPCKTDQLTHVYTLIIRPDAKYSILID 204
Query: 610 NEKVESGDLEADWDFLPP 663
N + ++G + DW+ +PP
Sbjct: 205 NTEKQTGSIYDDWNIIPP 222
>05_06_0014 +
24854462-24854570,24854958-24855065,24855240-24855432,
24855892-24856150,24856236-24856292,24856370-24856417,
24856725-24856811,24856885-24856942,24857084-24857151,
24857279-24857374,24857483-24857539,24857906-24857952,
24858184-24858210,24858312-24858504
Length = 468
Score = 216 bits (527), Expect = 1e-56
Identities = 96/191 (50%), Positives = 134/191 (70%), Gaps = 2/191 (1%)
Frame = +1
Query: 97 INCDVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDARF 270
++ +V FEE+F DD W S WV S+ E G FK TAG + DP DD+G++T+ DA+
Sbjct: 25 VSGEVIFEERF-DDDWGSRWVKSDWKKSEGKAGTFKHTAGSYSGDP-DDRGIQTTSDAKH 82
Query: 271 YALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGP 450
+A+S KF FSN+ + LVVQ+++K EQDI+CGG Y+K+ + QK G+TPY MFGP
Sbjct: 83 FAISAKFPEFSNKNRTLVVQYSIKIEQDIECGGAYIKLMSGYVNQKKFGGDTPYSFMFGP 142
Query: 451 DICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESG 630
DICG TKK+H+I SY+G+N+ IKKD++C+ D TH YT I++PD +Y +L+DN + E G
Sbjct: 143 DICGDQTKKLHLILSYQGQNYPIKKDLKCETDKLTHFYTFILRPDASYSLLVDNREREFG 202
Query: 631 DLEADWDFLPP 663
+ DWD LPP
Sbjct: 203 SMYTDWDILPP 213
>04_03_0812 -
19922208-19922357,19922448-19922564,19922681-19922752,
19922864-19923993,19924939-19925008,19925125-19925199
Length = 537
Score = 110 bits (265), Expect = 8e-25
Identities = 78/196 (39%), Positives = 106/196 (54%), Gaps = 11/196 (5%)
Frame = +1
Query: 106 DVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSR 285
D F E F D+S+E WV S GK+ K K SD +D GL SE A+ YA+ +
Sbjct: 24 DPLFYEPF-DESFEGRWVLS---GKDDYKGVWKHEK--SDGHEDYGLLVSEKAKKYAIIK 77
Query: 286 KF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVF---DCKLEQKDMHGETPYEIMFGPD 453
+ +P + + +V+QF V+ + ++CGG YLK D + K+ ETPY IMFGPD
Sbjct: 78 ELDEPVTLKDGTVVLQFEVRLQNGLECGGAYLKYIRPQDAAWDAKEFDNETPYTIMFGPD 137
Query: 454 ICGPGTKKVHVIFSYK----GK--NHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLID-N 612
CG T KVH I +K GK H +K D +H+YT I+KPDN +L+D
Sbjct: 138 KCG-STNKVHFILKHKNPKTGKYVEHHLKFPPSVPYDKLSHVYTAILKPDNEVRILVDGE 196
Query: 613 EKVESGDLEADWDFLP 660
EK ++ L AD DF P
Sbjct: 197 EKKKANFLSAD-DFEP 211
>03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026
Length = 585
Score = 70.9 bits (166), Expect = 8e-13
Identities = 29/54 (53%), Positives = 38/54 (70%)
Frame = +1
Query: 502 GKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPP 663
G NHLIKKD+ C+ D TH+YTLI++PD Y +LIDN + +G + D D LPP
Sbjct: 515 GNNHLIKKDVPCETDQLTHVYTLIIRPDAKYSILIDNTEKRTGSIYGDCDNLPP 568
>06_03_1514 +
30696632-30696724,30696857-30697009,30697226-30697309,
30697451-30697569,30697769-30697870,30699071-30699190,
30699285-30699350,30699563-30699629,30699720-30699773,
30700379-30700534,30701130-30701228
Length = 370
Score = 29.1 bits (62), Expect = 3.3
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 14/118 (11%)
Frame = -1
Query: 576 HNQSVQMCVDIIFAADIFFDEVVLTLVTEDYVYLLGSWTTDVRAEHNLIWS-LSVHVLLL 400
HN + M V I ++ D + + ++Y +L + +V HNL WS ++H+L
Sbjct: 88 HNALLAMAVGISQMQNV--DIMARKFLNQNYTVMLFHYDGNVDGWHNLEWSDKAIHILAR 145
Query: 399 Q-----FAVKDLEVSASTV-NVLFMFDSELDDQGF-------TLITERFELTGESIEP 265
FA + L + +F++D +L F +++E E+T +++P
Sbjct: 146 NQTKWWFAKRFLHPDVVAIYGFIFLWDEDLGVDNFDPRRYLDIMVSEGLEITQPALDP 203
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -2
Query: 455 MSGPNIISYGVSPCMSFCSSLQSKTLRYPPPQSMSCSCLTVNWTTKGL 312
M GP ++ ++P S +Q + +++ +SC+CL T+KGL
Sbjct: 674 MLGPTVLV--LAPTRELASQIQDEAVKFGRSSRVSCTCL-YGGTSKGL 718
>09_02_0286 -
6898041-6898144,6898881-6899005,6899158-6899207,
6899245-6899386,6899951-6900020,6900077-6900216,
6900291-6900365,6901083-6904723
Length = 1448
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -2
Query: 362 QSMSCSCLTVNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPAVNLNFPN 183
+S+ L+ N + G+P L GLN +++++ + P+ SSG L FP + N
Sbjct: 738 KSIGALDLSNNQLSGGIPPGLGGLNFLADF-DVSNNNLTGPIPSSGQLTTFPPSRYDNNN 796
Query: 182 SFPGCSL 162
G L
Sbjct: 797 GLCGIPL 803
>06_03_1275 +
28903961-28904123,28904225-28904322,28904406-28904550,
28904690-28904814,28904957-28905049,28905297-28905362,
28905459-28905524,28905790-28905870,28905947-28906123,
28906212-28906287,28906394-28906521,28906639-28906950
Length = 509
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -3
Query: 142 TNHQETSPQRIHHNLSKIMPA-S*QRPVQQLSFSIHS 35
TNH E P+ H LSKI+ A S RP+ +S+ +H+
Sbjct: 41 TNHVERPPKERH--LSKIIAAASGARPLADVSYCVHA 75
>11_01_0481 - 3702399-3703062,3703254-3703813
Length = 407
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 546 IIFAADIFFDEVVLTL-VTEDYVYLLGSWTTDVRAEHNLIWSLSVH 412
+I D FDE+ L + D + + SWT D + +WSL +
Sbjct: 171 VILCGDDLFDEIPPRLQIDGDGDHTMLSWTMDAMIDATELWSLDAY 216
>05_01_0421 +
3308692-3309070,3309199-3309339,3309776-3309897,
3310369-3310632,3310719-3310849,3311254-3311461,
3311564-3311632,3311722-3311799,3312448-3312621
Length = 521
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -2
Query: 140 ESSGNFSSKNTSQFIEDNASKLTTTSTTA 54
ES+G SSK + E++ + TTTSTTA
Sbjct: 59 ESAGVSSSKKKRRIEEESPAATTTTSTTA 87
>01_04_0010 -
15058175-15058195,15058320-15058430,15059031-15059246,
15059327-15059505,15059655-15059820,15059914-15059972,
15060065-15060107,15060285-15060354,15060458-15060547,
15060621-15060742,15060777-15060808,15060876-15061064,
15061148-15061241,15061325-15061412,15061498-15061718,
15061924-15061997,15062081-15062363,15062455-15062589,
15062721-15062942,15063029-15063208,15063305-15063402,
15063522-15063634,15064156-15064259,15064400-15064522,
15064857-15065192
Length = 1122
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -1
Query: 411 VLLLQFAVKDLEVSASTVNVLFMFDSELDDQGFTLITERFELTGESIEPRIFR 253
V LL L ++ +T +V+ ++DS+ + Q +R G+ E ++FR
Sbjct: 603 VFLLSTRAGGLGINLATADVVVLYDSDWNPQADLQAQDRAHRIGQKKEVQVFR 655
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,610,888
Number of Sequences: 37544
Number of extensions: 443704
Number of successful extensions: 1215
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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