Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10a22
(665 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 29 0.60
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|... 27 2.4
SPBC428.06c |||histone deacetylase complex subunit, RXT2 family ... 26 4.2
SPAC222.08c |||imidazoleglycerol-phosphate synthase |Schizosacch... 26 5.6
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.4
SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 7.4
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc... 25 7.4
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc... 25 9.8
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 9.8
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 29.1 bits (62), Expect = 0.60
Identities = 22/71 (30%), Positives = 31/71 (43%)
Frame = +1
Query: 274 SVVNDRPIIGVLSQEQSFYLHGKFPEENYTSYIASSYVKDIEASGARVVPILIGKDRSYY 453
SV+N+ +I L F+ F EE+ + IEA V P+ +G D
Sbjct: 142 SVINELDVIAKLGTP--FWPFTSFNEEDIKDAKDFDVTRPIEAVFTYVDPVRLGLDLQLV 199
Query: 454 KELMKKINGVL 486
EL + NGVL
Sbjct: 200 MELGQSKNGVL 210
>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 402
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 382 YVKDIEASGARVVPILIGKDRSYYKELMKKINGVLIPGGATF 507
YV+ + A+ + +L GK R Y KE + ++ + P G F
Sbjct: 156 YVEPVPATLSNKSLLLAGKLRKYLKEFLPYVDAIGTPEGYAF 197
>SPBC428.06c |||histone deacetylase complex subunit, RXT2 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 242
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +1
Query: 265 NEYSVVNDRPIIGVLSQEQSFYLHGKFP---EENYTSYIASSYVKDIEA 402
N Y+ +N I+ L++ Q H E+NY S +ASS ++ I A
Sbjct: 92 NPYNDINIAEIMSPLTKPQDLLTHPAISSIFEQNYLSILASSALEIISA 140
>SPAC222.08c |||imidazoleglycerol-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 25.8 bits (54), Expect = 5.6
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +1
Query: 466 KKINGVLIPGGATFFNQSNGYADAGQHIYELAIELNDVGDYFPIFGTCLGFELL 627
+ I+G++IPGG + + + + + L D G PI+GTC G LL
Sbjct: 58 ENIDGLIIPGGES--TTIGKLINIDEKLRDRLEHLVDQG--LPIWGTCAGMILL 107
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 265 NEYSVVNDRPIIGVLSQEQSFYLHGKFPEENYTS 366
N Y++ +DR ++ +L Q F+ FP N S
Sbjct: 405 NSYTISSDRSVVAILVNSQIFFY--SFPVSNLFS 436
>SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 266
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 331 LHGKFPEENYTSYIASSYVKDIEASG 408
L+GK PE N S++ S Y K + G
Sbjct: 78 LNGKLPEVNIESHMLSKYRKYLNEGG 103
>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 7.4
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -1
Query: 326 NDCS*ESTPIIGLSFTTEYSLLSTITAPSQ*KTYNQSKSNALFIVITVNQSSPENE-SHL 150
N C E + S + EY+ T +P + S+ ++IV T+N S P+++ S L
Sbjct: 26 NRCQ-EDLFALSSSKSPEYAFSLTQQSPFGPLDQSSSRRTFMYIVATLNASYPDHDFSSL 84
Query: 149 IKTNF 135
T+F
Sbjct: 85 QPTDF 89
>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 218
Score = 25.0 bits (52), Expect = 9.8
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +1
Query: 250 VIVDSNEYSVVNDRPIIGVLSQEQSFY 330
+ +N+ ++V +PIIG+ + E ++Y
Sbjct: 162 ITTTANQDTIVKSKPIIGIDAWEHAYY 188
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 450 IRTIFTDQNRHNPSSRCLN-VFDIRRSNVACVVLFREFSME 331
I T+F + +PSS L+ V+++ + N+ F E+S++
Sbjct: 1752 IITLFEKEANEHPSSIALHFVYNVDKENIYSYKFFSEYSIK 1792
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,677,016
Number of Sequences: 5004
Number of extensions: 55981
Number of successful extensions: 144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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