Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10a22
(665 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44698| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 6e-11
SB_8739| Best HMM Match : Peptidase_C26 (HMM E-Value=0.037) 61 7e-10
SB_46752| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 6e-08
SB_3484| Best HMM Match : Ribosomal_L17 (HMM E-Value=2.4) 50 2e-06
SB_13255| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_21330| Best HMM Match : JmjC (HMM E-Value=0.0054) 30 1.5
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_8293| Best HMM Match : zf-C2H2 (HMM E-Value=0.32) 29 3.4
SB_56313| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-14) 28 5.9
SB_33447| Best HMM Match : 7tm_1 (HMM E-Value=0.00026) 28 5.9
SB_11496| Best HMM Match : DUF408 (HMM E-Value=7.3e-07) 28 5.9
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
>SB_44698| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 64.9 bits (151), Expect = 6e-11
Identities = 30/60 (50%), Positives = 39/60 (65%)
Frame = +1
Query: 472 INGVLIPGGATFFNQSNGYADAGQHIYELAIELNDVGDYFPIFGTCLGFELLVILASGRG 651
I +++PGG SN Y G+ +YELA+E N+ G FPI+ CLGFELL + ASGRG
Sbjct: 78 IQRLVLPGGHVRLQDSN-YGKIGKRLYELAVEANNKGSVFPIWAECLGFELLALCASGRG 136
>SB_8739| Best HMM Match : Peptidase_C26 (HMM E-Value=0.037)
Length = 149
Score = 61.3 bits (142), Expect = 7e-10
Identities = 31/59 (52%), Positives = 43/59 (72%)
Frame = +1
Query: 481 VLIPGGATFFNQSNGYADAGQHIYELAIELNDVGDYFPIFGTCLGFELLVILASGRGKE 657
VL PGG + +S GYA G I++LA+E ND GD FP++GTCLGF+LL + A+ +GK+
Sbjct: 2 VLFPGGDSDLWKS-GYARTGAAIFDLAMEANDNGDVFPLWGTCLGFQLLHVRAA-KGKD 58
>SB_46752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 686
Score = 54.8 bits (126), Expect = 6e-08
Identities = 26/64 (40%), Positives = 40/64 (62%)
Frame = +1
Query: 454 KELMKKINGVLIPGGATFFNQSNGYADAGQHIYELAIELNDVGDYFPIFGTCLGFELLVI 633
+++ ++GV+ PGG N S YA G+ I ELAI+ N G+ FP++ CLG EL+ +
Sbjct: 478 EKMFHSVSGVVFPGGHIKLNASR-YAAVGKQILELAIKENLKGEVFPVWAECLGLELISM 536
Query: 634 LASG 645
+ SG
Sbjct: 537 IISG 540
>SB_3484| Best HMM Match : Ribosomal_L17 (HMM E-Value=2.4)
Length = 103
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/56 (46%), Positives = 39/56 (69%)
Frame = +1
Query: 262 SNEYSVVNDRPIIGVLSQEQSFYLHGKFPEENYTSYIASSYVKDIEASGARVVPIL 429
++E S+ ++PIIG+L+QE + GK +E YI SYV+ +E++GARVVPIL
Sbjct: 42 ADESSIRTNQPIIGILAQEAT----GKISKEVSGQYIEGSYVQMVESAGARVVPIL 93
>SB_13255| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/73 (32%), Positives = 41/73 (56%)
Frame = +1
Query: 208 LLLLWLYVFHCEGAVIVDSNEYSVVNDRPIIGVLSQEQSFYLHGKFPEENYTSYIASSYV 387
++L +V + I + +RPIIG+L+ + + K+ + S+I +SYV
Sbjct: 167 VILSLFFVGSAKARSIQHPTRDGLYTNRPIIGILAHDIDDDIIKKYGK----SFIPASYV 222
Query: 388 KDIEASGARVVPI 426
K +E++GARVVPI
Sbjct: 223 KYLESAGARVVPI 235
>SB_21330| Best HMM Match : JmjC (HMM E-Value=0.0054)
Length = 304
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Frame = +1
Query: 304 VLSQEQSFYLHGKFPEENYTSYIASSYVKDIEASGARVVPILIGKDRSYYKELMKKINGV 483
+L Q Q+ H + E + + + D+ A P + D Y + M K + +
Sbjct: 45 LLGQNQT---HLVYESEESSKELGGFSIVDVNAVDLEKFPSI--SDVKYSRITMNKGDCI 99
Query: 484 LIPGGATFFNQSNGYADAGQHI-YELAIELNDVG 582
+PGG +SNGY + I + E +D+G
Sbjct: 100 FVPGGIWHHVRSNGYMNTAVSIWFSRLYEFSDMG 133
>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5445
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +1
Query: 250 VIVDSNEYSVVNDRPIIGVLSQEQSFYLHGKFPEENYTSYIASSYVKDIEASGARVVPIL 429
VI S + V ++ IGV+S ++H F + + SY+ + + DI SG +
Sbjct: 3975 VIGVSKSFDVSPNKTRIGVVSYSSDAHIHFNFKKHSNVSYVEEA-INDISFSGGAKRNLA 4033
Query: 430 IGKDRSY 450
G D ++
Sbjct: 4034 RGLDATF 4040
>SB_8293| Best HMM Match : zf-C2H2 (HMM E-Value=0.32)
Length = 316
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 480 SIDSRGSNVLQPIQWIR*RRSTHLRACYRIERRRRLFSDLRNLSWF 617
S ++GS+VL P+ + R STH+ + RR + +RNL+ F
Sbjct: 112 SNQAQGSDVLLPLHISKERFSTHINLLLYSQGERRHYCLIRNLNRF 157
>SB_56313| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-14)
Length = 910
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +3
Query: 480 SIDSRGSNVLQPIQWIR*RRSTHLRACYRIERRRRLFSDLRNLSWF 617
S ++GS+VL P+ + R STH+ RR + +RNL+ F
Sbjct: 180 SNQAQGSDVLLPLHISKKRFSTHINLLLYSHGERRHYCLIRNLNRF 225
>SB_33447| Best HMM Match : 7tm_1 (HMM E-Value=0.00026)
Length = 557
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 205 ALLLLWLYVFHCEGAVIVDSNEYSVVNDR 291
A++L+W+YV +V N+Y V+DR
Sbjct: 176 AIILIWIYVTFLAAMPLVGWNQYVYVDDR 204
>SB_11496| Best HMM Match : DUF408 (HMM E-Value=7.3e-07)
Length = 825
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 301 GVLSQEQSFYLHGKFPEENYTSYIASSYVK 390
G E+S +HGK PE+ Y+SY S K
Sbjct: 783 GFTDLEKSRRIHGKSPEQFYSSYCTDSKQK 812
>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = -3
Query: 150 NKDKLYLVL---SKLLNALILNTHTYLYIIVIE*NVQALLISFTTKVI 16
N KL +V+ KLL + +NTH L II+I + +I T K++
Sbjct: 121 NTHKLLIVIINTHKLLTVITINTHKLLIIIIINTHKLLTVIIITHKLL 168
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -3
Query: 120 KLLNALILNTHTYLYIIVIE*NVQALLISFTTKVIT 13
KLL +I+NTH L +I+I + ++I T K++T
Sbjct: 323 KLLIIIIINTHKLLTVIIINTHKLLIVIINTHKLLT 358
Score = 28.3 bits (60), Expect = 5.9
Identities = 23/88 (26%), Positives = 38/88 (43%)
Frame = -3
Query: 276 RVLIAVHYHSAFAMKNVQPEQKQCTLHSDHR*PIVSGEREPPNKDKLYLVLSKLLNALIL 97
++LI + H + Q Q H H I + P + + KLL +I+
Sbjct: 398 KLLIVITTHPQVTHRYHQHPQLTHRYHHQHPQVIHRYHQHPQVTHRYHQQTHKLL-IVII 456
Query: 96 NTHTYLYIIVIE*NVQALLISFTTKVIT 13
NTH L +I+I + +I T K++T
Sbjct: 457 NTHKLLIVIIINTHRLLTVIINTHKLLT 484
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,605,782
Number of Sequences: 59808
Number of extensions: 405259
Number of successful extensions: 1018
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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