Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10a22
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.0  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 181 LTVITMKSALLLLWLYVFHCEGAVIVDSN 267
           LT++ M   L+ LWL     E  +I + N
Sbjct: 253 LTIVLMTMTLMTLWLEPSSTERMIIANLN 281


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 172 DDWLTVITMKSALLLLW 222
           DDW +V+ + S + L+W
Sbjct: 83  DDWTSVMELHSWMTLMW 99


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 156 PPNKDKLYLVLSKLLNALILNTHTYLYIIVI 64
           PP    L L+   LL   I+NT + L  ++I
Sbjct: 287 PPTSLVLPLIAKYLLFTFIMNTVSILVTVII 317


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 489 SRGSNVLQPIQWI 527
           +R SN+ QP QW+
Sbjct: 216 ARRSNLSQPFQWL 228


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 489 SRGSNVLQPIQWI 527
           +R SN+ QP QW+
Sbjct: 306 ARRSNLSQPFQWL 318


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,298
Number of Sequences: 438
Number of extensions: 4259
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)