Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10a21
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0533 + 4594169-4595065,4598375-4598983                           29   2.2  
04_04_0386 + 24865344-24865973,24866068-24866439                       29   2.2  
01_01_0368 + 2884425-2885069,2885215-2885301                           28   5.1  
09_02_0308 + 7137099-7137132,7137495-7137611,7138252-7138319,713...    28   6.8  
01_06_0210 - 27559090-27559239,27560445-27560567,27561069-275611...    28   6.8  
01_01_0537 + 3931429-3932316,3937245-3937553,3937646-3937912           27   8.9  

>05_01_0533 + 4594169-4595065,4598375-4598983
          Length = 501

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = -1

Query: 469 TQTPSHAIRNHVGRNAICSNIVHRMLCTEVAKHILQYVMLVITIIVCILFVAAASPLT 296
           T   +H       R ++C  I  R L  E A H +Q   L +  +V +LF    S LT
Sbjct: 296 TYLKAHPHAGKEERRSLCRLIDARKLTAEAAAHAVQNERLPVRCVVQVLFSEHGSKLT 353


>04_04_0386 + 24865344-24865973,24866068-24866439
          Length = 333

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +2

Query: 383 FSTQHSMNNVRTDSVSAHVVPDGVAGGLRPLQSV 484
           F + HSMN+  + S +A VVPD  AGG  P+  V
Sbjct: 201 FYSDHSMNHSVSSSEAA-VVPDAAAGGGAPMPVV 233


>01_01_0368 + 2884425-2885069,2885215-2885301
          Length = 243

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = -3

Query: 266 ATSSTSIPRFYLVVSIVPHTSNLKKSTMCLS*HCFHFPYDVSC*KASSKGCSQRLACYFS 87
           A+S+TS+ R        P +S  K    C S  CF++  DVS  K  S G     AC ++
Sbjct: 92  ASSNTSVLRLP-----APSSSQPKSFFSCRSYDCFYYVTDVSGVKCPSCGNQMTTACTYA 146


>09_02_0308 +
           7137099-7137132,7137495-7137611,7138252-7138319,
           7138413-7138538,7138650-7139619,7139641-7139737,
           7140026-7140113,7140336-7140396,7140425-7140447,
           7140663-7140776,7141193-7141306,7144731-7144825,
           7146506-7146824,7147166-7147309,7147463-7147564,
           7147868-7147971,7148121-7148247,7148804-7148845,
           7148939-7149091,7149326-7149426,7149807-7150227
          Length = 1139

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -1

Query: 424 AICSNIVHRMLCTEVAKHILQYVMLVITIIVCIL 323
           A C  I H +LC+E+  H       ++  + C+L
Sbjct: 459 ACCLTISHAVLCSEMGTHFSPCGRFLVACVACLL 492


>01_06_0210 -
           27559090-27559239,27560445-27560567,27561069-27561128,
           27562045-27562068,27562313-27562653,27562684-27563731
          Length = 581

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 462 PPATPSGTTWAETLS 418
           PPATPS T W +TL+
Sbjct: 2   PPATPSATRWPKTLT 16


>01_01_0537 + 3931429-3932316,3937245-3937553,3937646-3937912
          Length = 487

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -1

Query: 469 TQTPSHAIRNHVGRNAICSNIVHRMLCTEVAKHILQYVMLVITIIVCILF 320
           T   +HA  +   R ++C  I  R L  E A H +Q   L +  ++ +LF
Sbjct: 293 TYLKAHASTSKEERKSLCRLIDARKLTAEAAAHAVQNDRLPVRSVLQVLF 342


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,731,631
Number of Sequences: 37544
Number of extensions: 277072
Number of successful extensions: 727
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)