Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10a21
         (616 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13090.1 68416.m01639 ABC transporter, putative similar to MR...    29   3.2  
At4g37590.1 68417.m05320 phototropic-responsive NPH3 family prot...    28   4.3  
At4g31320.1 68417.m04443 auxin-responsive protein, putative / sm...    27   7.5  
At2g34030.1 68415.m04166 calcium-binding EF hand family protein ...    27   7.5  

>At3g13090.1 68416.m01639 ABC transporter, putative similar to
            MRP-like ABC transporter [Arabidopsis thaliana]
            GI:2316016; contains Pfam profile: PF00005 ABC
            transporter
          Length = 1466

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 370  ILQYVMLVITIIVCILFVAAASPLTNASISVQLRTPHHPQVF 245
            IL YV+L +    CIL  A    +T   ++ +L T  H ++F
Sbjct: 941  ILVYVLLAVASSFCILIRALLVAMTGFKMATELFTQMHLRIF 982


>At4g37590.1 68417.m05320 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 580

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 18/64 (28%), Positives = 25/64 (39%)
 Frame = -1

Query: 454 HAIRNHVGRNAICSNIVHRMLCTEVAKHILQYVMLVITIIVCILFVAAASPLTNASISVQ 275
           H   N   +  IC  +  R L  E   H +Q   L + ++V +LF        N S S  
Sbjct: 416 HPEMNKSEKKRICRLMDCRKLSAEACAHAVQNERLPMRVVVQVLFFEQVRANNNGSSSTG 475

Query: 274 LRTP 263
             TP
Sbjct: 476 NSTP 479


>At4g31320.1 68417.m04443 auxin-responsive protein, putative / small
           auxin up RNA (SAUR_C) similar to auxin-induced protein
           TGSAUR22 (GI:10185820) [Tulipa gesnerian]; similar to
           auxin-induced protein 15A (SP:P33081) from [Glycine max]
          Length = 189

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 263 TSSTSIPRFYLVVSIVPHTSNLKKSTMCLS*HCFH 159
           T +T+IP+ YL VS+       K  T  LS   FH
Sbjct: 75  TDTTAIPKGYLAVSVGKEEKRYKIPTEYLSHQAFH 109


>At2g34030.1 68415.m04166 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 566

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 257 STSIPRFYLVVSIVPHTSNLKKS 189
           S  IP FY+V +++P   NLK +
Sbjct: 441 SAGIPSFYIVFAMIPFARNLKNT 463


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,972,061
Number of Sequences: 28952
Number of extensions: 228061
Number of successful extensions: 575
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)