Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10a20
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31179| Best HMM Match : No HMM Matches (HMM E-Value=.)             229   1e-60
SB_31178| Best HMM Match : No HMM Matches (HMM E-Value=.)             209   2e-54
SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_46138| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.88 
SB_54489| Best HMM Match : Aa_trans (HMM E-Value=0.02)                 31   1.2  
SB_57001| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)                   30   1.5  
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   3.6  
SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_57667| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_44855| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_5048| Best HMM Match : DUF821 (HMM E-Value=0.22)                    28   8.2  
SB_7293| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.2  

>SB_31179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score =  229 bits (561), Expect = 1e-60
 Identities = 116/219 (52%), Positives = 150/219 (68%), Gaps = 14/219 (6%)
 Frame = +2

Query: 74  MIIKEYRVTLPLTVEEYQVAQLYCVAEVSKNETGGGEGIEVIKNEPFKDYPLLGGKY--- 244
           ++IKEYR+ LP++VEEYQ+AQLY VAE SKNETGGGEGIEV+ NEP+       GK    
Sbjct: 2   VVIKEYRIPLPISVEEYQIAQLYAVAEASKNETGGGEGIEVLVNEPYTAGEGGHGKNMPP 61

Query: 245 -SSGQYTYKIYHLASKVPAFIRLLAPKGSLEVHEEAWNAYPYCRTVLTNPGYMKENFVIC 421
              GQYT+K+ HL SKVP+F+R+LAP GSLEVHE+AWNAYP+CRT  +N  YMKE+F + 
Sbjct: 62  GMDGQYTHKLIHLHSKVPSFVRMLAPSGSLEVHEKAWNAYPFCRTEYSNT-YMKEHFSVI 120

Query: 422 IESLHLPDAGDQY-NVHELPPEKLKTREVVPIDIANDPLPSADYKSETDPTKFKSTKTGR 598
           I++ H P   D++ NVH L   +L+ RE+V IDI ND +   +YK++ DP+K  S K  R
Sbjct: 121 IDTWHKPGHKDEFHNVHNLGNPELQKREIVNIDIVNDKVDPHEYKADEDPSKVGSEKAKR 180

Query: 599 GPL---------VGPNWKNDVKPVMTCYKLVTAEFKWFG 688
           GPL           P+   +  P+MTCYKL   EFKW+G
Sbjct: 181 GPLKKDWQQKNEEDPSKSKEGYPMMTCYKLYRVEFKWWG 219


>SB_31178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score =  209 bits (510), Expect = 2e-54
 Identities = 112/213 (52%), Positives = 137/213 (64%), Gaps = 12/213 (5%)
 Frame = +2

Query: 80  IKEYRVTLPLTVEEYQVAQLYCVAEVSKNETGGGEGIEVIKNEPFKDYPLLGGK--YSSG 253
           +KEYRV LP++VE Y++AQLY V E S NETGGGEGIEV+KNEP+ +     G      G
Sbjct: 4   LKEYRVELPISVENYRIAQLYTVTEASMNETGGGEGIEVVKNEPYVEGKGEFGNDVTEPG 63

Query: 254 QYTYKIYHLASKVPAFIRLLAPKGSLEVHEEAWNAYPYCRTVLTNPGYMKENFVICIESL 433
           QYT KI HL SKVP +I  LAP+G+LEVHEEAWNAYPYC+TV TNP YM ENF + I++ 
Sbjct: 64  QYTLKIMHLKSKVPQWIVKLAPEGALEVHEEAWNAYPYCKTVYTNP-YMGENFHVIIKTW 122

Query: 434 HLPDAGDQY-NVHELPPEKLKTREVVPIDIANDP--LPSADYKSETDPTKFKSTKTGRGP 604
           H      ++ NVHEL   +L  REV+ IDIA +   +   DYK + DP   +S K   GP
Sbjct: 123 HKEGPSSRHSNVHELNESELAKREVIDIDIAAEKKLVGPHDYKEDEDPLLVRSEKANCGP 182

Query: 605 LVGPNWK-------NDVKPVMTCYKLVTAEFKW 682
           L  P+W         D  P+MTCYKL    FKW
Sbjct: 183 LT-PDWNKGASDTTKDGYPMMTCYKLYDVRFKW 214


>SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1548

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = +2

Query: 404 ENFVICIESLHLPDAG-DQYNVHELPPEKLKTREVVPIDIANDPLPSADYKSETD 565
           EN  + +E++     G  Q     L PE+L++REV+P+DIA D LP   Y +E D
Sbjct: 706 ENSNVALEAVTSEGVGLAQVKCFNLSPEELESREVIPVDIAFDELPEKYYVAEED 760


>SB_46138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1106

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 500 EVVPIDIANDPLPSADYKSETDPTKFKSTKTGRGPLVGPNWKNDVKPVMT 649
           EV+  D  +DPLPS  +++  +P +     T + PL    +    KP  T
Sbjct: 497 EVLCTDGEDDPLPSKQFQTSQNPLRQTRYNTSQNPLRQTRYNTSQKPSQT 546


>SB_54489| Best HMM Match : Aa_trans (HMM E-Value=0.02)
          Length = 385

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
 Frame = +2

Query: 32  VDSFMCI*VKKLLNMIIKEYRVTLPLTVEEYQVAQLYCVAEVSKNETGGGEG-IEVIKNE 208
           V SFMC      L M+I++    L + + +Y +  LYC   V           I  +   
Sbjct: 245 VFSFMCHHTISSLIMLIRDKHKALAVFLFDYTIELLYCSVLVGTAILSRPPSEINALYTL 304

Query: 209 PFKDYPL-LGGKYSSGQYTYKIYHLASKVP 295
            F+DYPL +  K+ S    Y ++ L+S  P
Sbjct: 305 TFRDYPLEILAKFLS---FYPVFTLSSNFP 331


>SB_57001| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1487

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -2

Query: 397 VTGIRQHCSTVRVGVPRFFVYFERSFRSK*PDEGRNFGRQMVDLVRVLSRRVFSTEQ 227
           VT   +HC TV+  +P+   Y  RS     PD  R   R     +  L ++++ +++
Sbjct: 99  VTTTPRHCRTVQPTIPKDIRYQFRSAEEDKPDSRRRINRSR-SFINTLPKQIYESDE 154


>SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)
          Length = 587

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -3

Query: 156 TSATQYNWAT*YSSTVRGSVTRYSLIIMFNNFFT*MHMKLSTN 28
           T+ T     T Y++TV  ++T Y+  I  NN+ T ++  ++TN
Sbjct: 389 TNYTTTTTITNYTTTVSTTITNYTTTITINNYTTTVNTTITTN 431


>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 4303

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 565  PDQVQVYEDRPRTARRAKLEERRETGHDVLQA 660
            P+ V  +ED  +  R +KLE +R   HDV  A
Sbjct: 4268 PEYVAKHEDNEKLRRSSKLERKRCLKHDVFSA 4299


>SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 808

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 467 HELPPEKLKTREVVPIDIANDPL--PSADYKSETDPTKFKSTKTGRGP 604
           HE   E+ + RE  P+    D    P  D +S  DP++ ++  + +GP
Sbjct: 272 HETTAERPQRREFRPVSPKEDESQEPHEDERSPLDPSRRRTNSSSQGP 319


>SB_57667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 799

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 314 APKGSLEVHEEAWNAYPYCRTVLTNP 391
           +PK  L +H   W+    CRTVLT P
Sbjct: 528 SPKMILRLHNLCWHHAILCRTVLTPP 553


>SB_44855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 247

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 282 AKW*ILYVYCPDEYFPPSSG 223
           +KW I   Y PD YFPP  G
Sbjct: 124 SKWAISKAYFPDYYFPPFCG 143


>SB_5048| Best HMM Match : DUF821 (HMM E-Value=0.22)
          Length = 374

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 14/104 (13%)
 Frame = +2

Query: 365 YCRTVL-----TNPGYMKENFVICIESLHLPDAGDQYNVHELPPEKLKTREVVPIDIAND 529
           YC+T+      T  G      ++ +E +HLPD     N+ + P EK K    +PI     
Sbjct: 102 YCKTIQMARFQTEKGKQNSLVLVVLEEVHLPDMEFFVNLGDWPLEKRKDNP-IPILSWCG 160

Query: 530 PLPSADYKSET-DPTKFKSTKTGRGPL--------VGPNWKNDV 634
              +AD    T D T+      GR  L         GP WK+ +
Sbjct: 161 SEDTADIVMPTYDLTEAALETMGRVSLDMLSVQANTGPKWKDKI 204


>SB_7293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 21/79 (26%), Positives = 27/79 (34%)
 Frame = +1

Query: 397 HERKLRYMYRIAAFTGRRRPIQCPRAAA*ETKDPRGGPHRHCERPPPVGRLQIGDRPDQV 576
           HE    Y Y     T    P  CPR+A    KD   G   +C  PP    +   +     
Sbjct: 24  HELLNAYGYMRGYMTSSGTP-DCPRSARYILKDYVNGKLLYCTPPPGEDAVVFQEGRHAT 82

Query: 577 QVYEDRPRTARRAKLEERR 633
             YED     R    + R+
Sbjct: 83  GKYEDMDEVVRHRPSDPRK 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,517,173
Number of Sequences: 59808
Number of extensions: 491958
Number of successful extensions: 1288
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1279
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)