Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10a17
(705 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0664 - 21659497-21659547,21659750-21659860,21659971-216600... 272 2e-73
07_01_1132 + 10531922-10532136,10532307-10532433,10532945-105331... 29 2.7
06_03_0615 - 22761375-22761760,22762218-22765026 29 4.8
02_05_0235 - 27068516-27069032,27069697-27069788,27070056-270702... 28 6.3
07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,557... 28 8.3
04_04_0779 - 28023735-28024058,28024520-28024618,28024704-280249... 28 8.3
>12_02_0664 -
21659497-21659547,21659750-21659860,21659971-21660039,
21660442-21660513,21660669-21660749,21661256-21661348,
21661581-21661733,21661846-21661897,21662033-21662218,
21662830-21662949,21663059-21663297
Length = 408
Score = 272 bits (667), Expect = 2e-73
Identities = 121/203 (59%), Positives = 161/203 (79%), Gaps = 1/203 (0%)
Frame = +2
Query: 98 EDEDFVDPWTVT-GKSDTGIDYDKLIKRFGSQKIDDELIQRFEKVIGRKAHHLLRRGIFF 274
E+E V+PW V+ GK GIDYDKL+ +FG Q++DD L+ R ++ R H LRRG+FF
Sbjct: 20 EEEQVVNPWEVSAGKG--GIDYDKLVDQFGCQRLDDALVARVARLTARPPHRFLRRGLFF 77
Query: 275 SHRDLNVILNLHEAGKKFYLYTGRGPSSDSMHLGHMIPFMFTKWLQDVFNVPLIIQLTDD 454
+HRDLN IL+L+E G+KFYLYTGRGPSS+++HLGH+IPFMFTK+LQD F VPL+IQLTDD
Sbjct: 78 AHRDLNEILDLYEKGEKFYLYTGRGPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDD 137
Query: 455 EKVLWRDIKVEDARKMAYNNAKDIIAIGFDPSNTFIFNDLDFIGQCPAFYQNMLRIQKCV 634
EK LW+++ VE+ +++A NAKDIIA GFD TFIF+D +++G AFY+NM+++ +CV
Sbjct: 138 EKFLWKNLTVEETKRLARENAKDIIACGFDVERTFIFSDFNYVG--GAFYENMVKVARCV 195
Query: 635 TYNQVKGIFGFGDSDVIGKITFP 703
TYN+V GIFGF D IGK++FP
Sbjct: 196 TYNKVVGIFGFTPEDHIGKVSFP 218
>07_01_1132 +
10531922-10532136,10532307-10532433,10532945-10533100,
10533755-10533847,10534010-10534090,10534205-10534276,
10534608-10534676,10534764-10534874,10535039-10535089
Length = 324
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 647 VKGIFGFGDSDVIGKITFP 703
+KGIFG D IGK++FP
Sbjct: 115 LKGIFGISPEDQIGKVSFP 133
>06_03_0615 - 22761375-22761760,22762218-22765026
Length = 1064
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 23 LKITFYVKNLNNKMAEDKTINIAIAEDEDFVDPWTVT 133
L + + + N + +A K +++++A +DF PWT T
Sbjct: 723 LVVVWILINRSRTLAGKKAMSMSVAGGDDFSHPWTFT 759
>02_05_0235 - 27068516-27069032,27069697-27069788,27070056-27070289,
27071569-27071676,27071796-27071855,27072368-27072443,
27072550-27072710,27076919-27076981,27077061-27077148,
27077568-27078308,27078406-27079033,27079314-27079368,
27082073-27083527
Length = 1425
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 152 IDYDKLIKRFGSQKIDDELIQRFEKVIGRKAHHLLR 259
+ + +++ +GS+ +DD+L E V G H LL+
Sbjct: 997 LQHPNIVRYYGSEMVDDKLYIYLEYVSGGSIHKLLQ 1032
>07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,
5572773-5572949,5573049-5573145,5573575-5573687,
5573774-5573896,5574004-5574075,5575340-5575432,
5575564-5575674,5575767-5575889,5576834-5576890,
5576939-5577022,5577140-5577214,5577418-5577554,
5577719-5577853,5579029-5579168,5579334-5579399,
5579732-5579838,5579910-5579990,5580064-5580138,
5580224-5580325,5581837-5582005,5582090-5582217,
5582596-5582679,5582779-5582879,5583729-5583882,
5583964-5584038,5584112-5584262,5584463-5585078,
5585427-5585487,5585874-5586019,5586104-5586287,
5586363-5586440,5586603-5586931,5587023-5587199,
5587571-5587667,5587742-5587897,5587962-5588198,
5588271-5588354,5588426-5588486,5588762-5588898
Length = 1912
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = -3
Query: 703 WECNLANDIRITETEYALYLVVCDTFLYP*HVLVKSWALPNKIQIIKYKCI*RIKSNCY 527
W L +IR+ +TE L T L +K + +P KIQ + KC + + Y
Sbjct: 1813 WSVYLDQEIRLGDTEIIRALFERVTCLSLPPKKMKIYLIPRKIQFVSEKCNPELSDSSY 1871
>04_04_0779 -
28023735-28024058,28024520-28024618,28024704-28024940,
28025227-28025334,28025427-28025486,28025813-28025888,
28025984-28026144,28026374-28026436,28026543-28026630,
28026872-28027612,28027695-28028239
Length = 833
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 152 IDYDKLIKRFGSQKIDDELIQRFEKVIGRKAHHLLR 259
+ + +++ +GS+ +DD+L E V G H LL+
Sbjct: 466 LQHPNIVQYYGSETVDDKLYIYLEYVSGGSIHKLLQ 501
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,071,501
Number of Sequences: 37544
Number of extensions: 366089
Number of successful extensions: 734
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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