Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10a17
(705 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132853-10|CAB60439.2| 417|Caenorhabditis elegans Hypothetical... 279 2e-75
AL021470-5|CAE17953.1| 417|Caenorhabditis elegans Hypothetical ... 279 2e-75
AB096635-1|BAC76735.1| 417|Caenorhabditis elegans tryptophanyl-... 279 2e-75
U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical pr... 29 4.3
L15188-9|AAM22024.1| 618|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z81508-8|CAI58634.1| 294|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z81508-1|CAB04142.1| 331|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z81536-11|CAB04363.2| 295|Caenorhabditis elegans Hypothetical p... 27 9.9
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p... 27 9.9
U40411-2|AAR25660.2| 413|Caenorhabditis elegans Hypothetical pr... 27 9.9
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep... 27 9.9
>AL132853-10|CAB60439.2| 417|Caenorhabditis elegans Hypothetical
protein Y80D3A.1 protein.
Length = 417
Score = 279 bits (683), Expect = 2e-75
Identities = 122/202 (60%), Positives = 159/202 (78%)
Frame = +2
Query: 98 EDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQKIDDELIQRFEKVIGRKAHHLLRRGIFFS 277
++ED V PW VT TGIDYDKLI +FG +K+D+E+I RFE+V G KA +LRRG+FF+
Sbjct: 29 DEEDRVTPWEVTTTKATGIDYDKLIVKFGCRKLDEEIIARFERVTGHKASPMLRRGMFFA 88
Query: 278 HRDLNVILNLHEAGKKFYLYTGRGPSSDSMHLGHMIPFMFTKWLQDVFNVPLIIQLTDDE 457
HRDL IL+ E GK FYLYTGRG SS S+HLGH++PF+FTKWLQ+VF+VPL+IQ+TDDE
Sbjct: 89 HRDLTAILDRKEQGKPFYLYTGRGASSGSLHLGHLVPFIFTKWLQEVFDVPLVIQMTDDE 148
Query: 458 KVLWRDIKVEDARKMAYNNAKDIIAIGFDPSNTFIFNDLDFIGQCPAFYQNMLRIQKCVT 637
K LW+D+KV++A+KMA N KDII++GFDP+ TFIFN+ D++ CP FY+N+++I K V
Sbjct: 149 KFLWKDMKVDEAKKMARENMKDIISVGFDPTKTFIFNNFDYM--CPPFYENIVKIWKVVN 206
Query: 638 YNQVKGIFGFGDSDVIGKITFP 703
NQ + IFGF D +GK FP
Sbjct: 207 TNQARAIFGFTPEDCLGKAAFP 228
>AL021470-5|CAE17953.1| 417|Caenorhabditis elegans Hypothetical
protein Y80D3A.1 protein.
Length = 417
Score = 279 bits (683), Expect = 2e-75
Identities = 122/202 (60%), Positives = 159/202 (78%)
Frame = +2
Query: 98 EDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQKIDDELIQRFEKVIGRKAHHLLRRGIFFS 277
++ED V PW VT TGIDYDKLI +FG +K+D+E+I RFE+V G KA +LRRG+FF+
Sbjct: 29 DEEDRVTPWEVTTTKATGIDYDKLIVKFGCRKLDEEIIARFERVTGHKASPMLRRGMFFA 88
Query: 278 HRDLNVILNLHEAGKKFYLYTGRGPSSDSMHLGHMIPFMFTKWLQDVFNVPLIIQLTDDE 457
HRDL IL+ E GK FYLYTGRG SS S+HLGH++PF+FTKWLQ+VF+VPL+IQ+TDDE
Sbjct: 89 HRDLTAILDRKEQGKPFYLYTGRGASSGSLHLGHLVPFIFTKWLQEVFDVPLVIQMTDDE 148
Query: 458 KVLWRDIKVEDARKMAYNNAKDIIAIGFDPSNTFIFNDLDFIGQCPAFYQNMLRIQKCVT 637
K LW+D+KV++A+KMA N KDII++GFDP+ TFIFN+ D++ CP FY+N+++I K V
Sbjct: 149 KFLWKDMKVDEAKKMARENMKDIISVGFDPTKTFIFNNFDYM--CPPFYENIVKIWKVVN 206
Query: 638 YNQVKGIFGFGDSDVIGKITFP 703
NQ + IFGF D +GK FP
Sbjct: 207 TNQARAIFGFTPEDCLGKAAFP 228
>AB096635-1|BAC76735.1| 417|Caenorhabditis elegans
tryptophanyl-tRNA synthetase (cytosolic)protein.
Length = 417
Score = 279 bits (683), Expect = 2e-75
Identities = 122/202 (60%), Positives = 159/202 (78%)
Frame = +2
Query: 98 EDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQKIDDELIQRFEKVIGRKAHHLLRRGIFFS 277
++ED V PW VT TGIDYDKLI +FG +K+D+E+I RFE+V G KA +LRRG+FF+
Sbjct: 29 DEEDRVTPWEVTTTKATGIDYDKLIVKFGCRKLDEEIIARFERVTGHKASPMLRRGMFFA 88
Query: 278 HRDLNVILNLHEAGKKFYLYTGRGPSSDSMHLGHMIPFMFTKWLQDVFNVPLIIQLTDDE 457
HRDL IL+ E GK FYLYTGRG SS S+HLGH++PF+FTKWLQ+VF+VPL+IQ+TDDE
Sbjct: 89 HRDLTAILDRKEQGKPFYLYTGRGASSGSLHLGHLVPFIFTKWLQEVFDVPLVIQMTDDE 148
Query: 458 KVLWRDIKVEDARKMAYNNAKDIIAIGFDPSNTFIFNDLDFIGQCPAFYQNMLRIQKCVT 637
K LW+D+KV++A+KMA N KDII++GFDP+ TFIFN+ D++ CP FY+N+++I K V
Sbjct: 149 KFLWKDMKVDEAKKMARENMKDIISVGFDPTKTFIFNNFDYM--CPPFYENIVKIWKVVN 206
Query: 638 YNQVKGIFGFGDSDVIGKITFP 703
NQ + IFGF D +GK FP
Sbjct: 207 TNQARAIFGFTPEDCLGKAAFP 228
>U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical
protein F13H8.2 protein.
Length = 929
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +2
Query: 452 DEKVLWRDIKVEDARKMAYNNAKDIIAIGFDPSNTFI 562
+E ++W + + + N+ KDI+A+ F P + +I
Sbjct: 430 NEVIVWSTHSLRSSLTLTDNDIKDIVAVNFVPGDNYI 466
>L15188-9|AAM22024.1| 618|Caenorhabditis elegans Hypothetical
protein C14B9.2 protein.
Length = 618
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +2
Query: 41 VKNLNNKMAEDKTINIAIAEDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQK 193
V N+ K +DK A+A++E+F G D+G++++ ++ + +K
Sbjct: 407 VLNIAQKYQKDK-YKFAVADEEEFAKELEELGLGDSGLEHNVVVFGYDGKK 456
>Z81508-8|CAI58634.1| 294|Caenorhabditis elegans Hypothetical
protein F20E11.15 protein.
Length = 294
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 526 NIFGIIISHFPCIFNFYI 473
N+FG+I S F CI N +I
Sbjct: 15 NLFGVICSTFSCIMNIFI 32
>Z81508-1|CAB04142.1| 331|Caenorhabditis elegans Hypothetical
protein F20E11.1 protein.
Length = 331
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +2
Query: 368 HLGHMIPFMFTKWL--QDVFNVPLIIQLT 448
H G+ P +FT W+ D PLI+Q++
Sbjct: 256 HGGNFSPILFTNWIIVTDFITTPLIVQMS 284
>Z81536-11|CAB04363.2| 295|Caenorhabditis elegans Hypothetical
protein F40D4.7 protein.
Length = 295
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 526 NIFGIIISHFPCIFNFYI 473
N+FG+I S F CI N +I
Sbjct: 15 NLFGVICSIFSCIMNIFI 32
>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
protein 68 protein.
Length = 5079
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 221 EKVIGRKAHHLLRRGIFFSHRDLNVILNLHE 313
E ++ R L+ IFF H DL +L++HE
Sbjct: 2137 EAILKRGLWKLMNNRIFFQHPDLMRLLSVHE 2167
>U40411-2|AAR25660.2| 413|Caenorhabditis elegans Hypothetical
protein B0403.5 protein.
Length = 413
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 44 KNLNNK-MAEDKTINIAIAEDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQKIDDEL 208
+N N+K M ED I +ED + + GK+DT ID+ + + GS+ E+
Sbjct: 194 RNKNSKIMPEDGDFGIDFSEDGENENITKTIGKTDTKIDFS--VDKKGSEDYYSEI 247
>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
protein.
Length = 5071
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 221 EKVIGRKAHHLLRRGIFFSHRDLNVILNLHE 313
E ++ R L+ IFF H DL +L++HE
Sbjct: 2258 EAILKRGLWKLMNNRIFFQHPDLMRLLSVHE 2288
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,385,435
Number of Sequences: 27780
Number of extensions: 354876
Number of successful extensions: 787
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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