Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10a17
(705 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04600.2 68416.m00491 tRNA synthetase class I (W and Y) famil... 262 1e-70
At3g04600.1 68416.m00490 tRNA synthetase class I (W and Y) famil... 262 1e-70
At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) famil... 29 3.0
At3g19330.3 68416.m02453 polyadenylate-binding protein-related /... 28 6.9
At3g19330.2 68416.m02452 polyadenylate-binding protein-related /... 28 6.9
At3g19330.1 68416.m02451 polyadenylate-binding protein-related /... 28 6.9
>At3g04600.2 68416.m00491 tRNA synthetase class I (W and Y) family
protein contains Pfam profile: PF00579 tRNA synthetases
class I (W and Y)
Length = 402
Score = 262 bits (643), Expect = 1e-70
Identities = 116/214 (54%), Positives = 157/214 (73%)
Frame = +2
Query: 62 MAEDKTINIAIAEDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQKIDDELIQRFEKVIGRK 241
M DK E V+PW V+ K IDYDKLI +FG Q++D+ LI R +++ R+
Sbjct: 1 MEVDKKDEREAESSEQVVNPWEVSAKDGGKIDYDKLIDKFGCQRLDESLIDRVQRLTSRQ 60
Query: 242 AHHLLRRGIFFSHRDLNVILNLHEAGKKFYLYTGRGPSSDSMHLGHMIPFMFTKWLQDVF 421
H LRR +FF+HRD N IL+ +E G KFYLYTGRGPSS+++HLGH+IPFMFTK+LQ+ F
Sbjct: 61 PHVFLRRSVFFAHRDFNEILDAYERGDKFYLYTGRGPSSEALHLGHLIPFMFTKYLQEAF 120
Query: 422 NVPLIIQLTDDEKVLWRDIKVEDARKMAYNNAKDIIAIGFDPSNTFIFNDLDFIGQCPAF 601
VPL+IQLTDDEK +W+++ VE+++++A NAKDIIA GFD + TFIF+D D++G AF
Sbjct: 121 KVPLVIQLTDDEKSIWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAF 178
Query: 602 YQNMLRIQKCVTYNQVKGIFGFGDSDVIGKITFP 703
Y+NM+++ KCVT N+ GIFGF D I K++FP
Sbjct: 179 YKNMVKVGKCVTLNKAMGIFGFSGEDPIAKLSFP 212
>At3g04600.1 68416.m00490 tRNA synthetase class I (W and Y) family
protein contains Pfam profile: PF00579 tRNA synthetases
class I (W and Y)
Length = 402
Score = 262 bits (643), Expect = 1e-70
Identities = 116/214 (54%), Positives = 157/214 (73%)
Frame = +2
Query: 62 MAEDKTINIAIAEDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQKIDDELIQRFEKVIGRK 241
M DK E V+PW V+ K IDYDKLI +FG Q++D+ LI R +++ R+
Sbjct: 1 MEVDKKDEREAESSEQVVNPWEVSAKDGGKIDYDKLIDKFGCQRLDESLIDRVQRLTSRQ 60
Query: 242 AHHLLRRGIFFSHRDLNVILNLHEAGKKFYLYTGRGPSSDSMHLGHMIPFMFTKWLQDVF 421
H LRR +FF+HRD N IL+ +E G KFYLYTGRGPSS+++HLGH+IPFMFTK+LQ+ F
Sbjct: 61 PHVFLRRSVFFAHRDFNEILDAYERGDKFYLYTGRGPSSEALHLGHLIPFMFTKYLQEAF 120
Query: 422 NVPLIIQLTDDEKVLWRDIKVEDARKMAYNNAKDIIAIGFDPSNTFIFNDLDFIGQCPAF 601
VPL+IQLTDDEK +W+++ VE+++++A NAKDIIA GFD + TFIF+D D++G AF
Sbjct: 121 KVPLVIQLTDDEKSIWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAF 178
Query: 602 YQNMLRIQKCVTYNQVKGIFGFGDSDVIGKITFP 703
Y+NM+++ KCVT N+ GIFGF D I K++FP
Sbjct: 179 YKNMVKVGKCVTLNKAMGIFGFSGEDPIAKLSFP 212
>At3g02660.1 68416.m00257 tRNA synthetase class I (W and Y) family
protein similar to SP|P00952 Tyrosyl-tRNA synthetase (EC
6.1.1.1) (Tyrosine--tRNA ligase) (TyrRS) {Bacillus
stearothermophilus}; contains Pfam profiles PF00579:
tRNA synthetases class I (W and Y), PF01479: S4 domain
Length = 511
Score = 29.1 bits (62), Expect = 3.0
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +2
Query: 332 LYTGRGPSSDSMHLGHMIPFMFTKWLQ 412
+Y G P+++S+HLG+++ + W Q
Sbjct: 117 VYCGFDPTAESLHLGNLLGIIVLSWFQ 143
>At3g19330.3 68416.m02453 polyadenylate-binding protein-related /
PABP-related similar to At14a (GI:11994571 and
GI:11994573) [Arabidopsis thaliana]; similar to
Polyadenylate-binding protein 2 (Poly(A)-binding protein
2) (PABP 2) (Swiss-Prot:P42731) [Arabidopsis thaliana]
Length = 345
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 98 EDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQK-IDDELIQRFEKVIGRKAH 247
+D D +D + + TGI+YDK + R G ++ D IQ K++ RK+H
Sbjct: 261 KDLDTID--RLVSRLHTGIEYDKFLIRLGLERGRDVHSIQEILKLL-RKSH 308
>At3g19330.2 68416.m02452 polyadenylate-binding protein-related /
PABP-related similar to At14a (GI:11994571 and
GI:11994573) [Arabidopsis thaliana]; similar to
Polyadenylate-binding protein 2 (Poly(A)-binding protein
2) (PABP 2) (Swiss-Prot:P42731) [Arabidopsis thaliana]
Length = 349
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 98 EDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQK-IDDELIQRFEKVIGRKAH 247
+D D +D + + TGI+YDK + R G ++ D IQ K++ RK+H
Sbjct: 261 KDLDTID--RLVSRLHTGIEYDKFLIRLGLERGRDVHSIQEILKLL-RKSH 308
>At3g19330.1 68416.m02451 polyadenylate-binding protein-related /
PABP-related similar to At14a (GI:11994571 and
GI:11994573) [Arabidopsis thaliana]; similar to
Polyadenylate-binding protein 2 (Poly(A)-binding protein
2) (PABP 2) (Swiss-Prot:P42731) [Arabidopsis thaliana]
Length = 382
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 98 EDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQK-IDDELIQRFEKVIGRKAH 247
+D D +D + + TGI+YDK + R G ++ D IQ K++ RK+H
Sbjct: 293 KDLDTID--RLVSRLHTGIEYDKFLIRLGLERGRDVHSIQEILKLL-RKSH 340
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,273,666
Number of Sequences: 28952
Number of extensions: 322331
Number of successful extensions: 748
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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