Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10a16
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   1.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.9  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   7.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.8  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 606 INSSRERVHHPEYRQPHS 553
           IN ++ + HHP Y++P +
Sbjct: 147 INFTKLKRHHPRYKRPRT 164


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 191 SIQARCTGFYSSLSEPHH 244
           S ++ C+G  +SL+E HH
Sbjct: 495 STESTCSGEVASLTEYHH 512


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 645 VRDHSIFIGCSQFINSSRERVHHPEYR 565
           VRDH+I   C +   S  ++V H  Y+
Sbjct: 126 VRDHNISALCKELGISVVQKVSHTLYK 152


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 505 VNQQCRERGLSWRPSPTQ 452
           V ++C ERG+ + P P +
Sbjct: 766 VQKKCEERGILFMPIPNR 783


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/34 (26%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = -2

Query: 608 LSTAPEKGFTILNTGNHIAV--PEGIHLAPLVVE 513
           +STA + G+ + + GNH+ +   +G+++   +V+
Sbjct: 333 ISTAIDLGYVVDSYGNHVKLYTKQGLNVLGNIVQ 366


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/34 (26%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = -2

Query: 608 LSTAPEKGFTILNTGNHIAV--PEGIHLAPLVVE 513
           +STA + G+ + + GNH+ +   +G+++   +V+
Sbjct: 333 ISTAIDLGYVVDSYGNHVKLYTKQGLNVLGNIVQ 366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,236
Number of Sequences: 438
Number of extensions: 3721
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)